View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727_high_19 (Length: 375)
Name: NF2727_high_19
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 34725086 - 34724728
Alignment:
| Q |
1 |
accaaaaatcattttctttgtcatatagcaaagtgcagttctaaatttgaacnnnnnnnnnnn----gaggtaaaatttgaattagagccgtttggattt |
96 |
Q |
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| T |
34725086 |
accaaaaatcattttctttgtcatatagcaaagtgcagttctaaatttgaacatttattttttttttgaggtaaaatttgaattagagccgtttggattt |
34724987 |
T |
|
| Q |
97 |
tattttcattttatgatacaagtttgaattacaaaaatatcatttccgtttataagtgtttgtacccgtatataatggatttaaacatctgtgtaaaata |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34724986 |
tattttcattttatgatacaagtttgaattacaaaaatatcatttccgtttccaagtgtttgtacccgtatataatggatttaaatatctgtgtaaaata |
34724887 |
T |
|
| Q |
197 |
gttttacactaacatccaatgaaaacctattgttttgtcaatcacctcactattgtaaggatgttttgagattagtagagtatgatatggataaatggtg |
296 |
Q |
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| T |
34724886 |
gttttacactaacatccaatgaaaacctattgttttgtcaatcacctcactattgtaaggatgttttgagattagtagagtatgatatggataaatggtg |
34724787 |
T |
|
| Q |
297 |
gtttctcatctgatatcagagtacatgctcattgaactctttataaatgacccttataa |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34724786 |
gtttctcatctgatatcagagtacatgctcattgaactctttataaatgacccttataa |
34724728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 187 - 336
Target Start/End: Complemental strand, 34729063 - 34728912
Alignment:
| Q |
187 |
gtgtaaaatagttttacactaacatccaatgaaaacctattgttttgtcaatcacctcactattg----taaggatgttttgagattagtagagtatgat |
282 |
Q |
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| T |
34729063 |
gtgtaaaatagttttacattgagatccaatgaaaacctattgttttagcggtcacctcactatttattataaggatattttgaaattagtag--tacggc |
34728966 |
T |
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| Q |
283 |
atggataaatggtggtttctcatctgatatcagagtacatgctcattgaactct |
336 |
Q |
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|||||||||| ||||||||||| ||| || ||||| | |||||||||||||| |
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| T |
34728965 |
atggataaattttggtttctcattggatgtcggagtataagctcattgaactct |
34728912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 6453284 - 6453252
Alignment:
| Q |
187 |
gtgtaaaatagttttacactaacatccaatgaa |
219 |
Q |
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| T |
6453284 |
gtgtaaaatagttttacactaacatgcaatgaa |
6453252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 36636342 - 36636378
Alignment:
| Q |
187 |
gtgtaaaatagttttacactaacatccaatgaaaacc |
223 |
Q |
| |
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|||||||||||||||||||| ||||||||||| |||| |
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| T |
36636342 |
gtgtaaaatagttttacactgacatccaatgagaacc |
36636378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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