View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727_high_21 (Length: 337)
Name: NF2727_high_21
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 2 - 322
Target Start/End: Original strand, 10818933 - 10819253
Alignment:
| Q |
2 |
ttccatttattgtatattgttaagtacaagtaggagtacattgttgtatacatagtttagatgcttattggagcatacacggatatataacaaaagtaga |
101 |
Q |
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| T |
10818933 |
ttccatttattgtatattgttaattacaagtgggagtacattgttgtatacatagtttagaggcttattagagcatacacggatatataacaaaagtaga |
10819032 |
T |
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| Q |
102 |
atcaaagtaggaaagatacactcactaggcagaaattcacataaaaggaaacataacgagttacaaagttatttttcttcttagtatttatttcccatca |
201 |
Q |
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| T |
10819033 |
atcaaagtagaaaagatacactcactaggcagaaattcacataaaaggaagcataacgagttacaaagttatttttcttcttagtatttatttcccatca |
10819132 |
T |
|
| Q |
202 |
aactaagaagagaacatgttagaagcgcttggtagcttgacttctcccttttgagaaagaggaatggtgaagtttccaataacaggaaggtcaataacaa |
301 |
Q |
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| T |
10819133 |
aactaagaagagaacatgttagaagcgcttggtagcttgacttctcccttttgagaaagaggaatggtgaagtttccaataacaggaaggtcaataacaa |
10819232 |
T |
|
| Q |
302 |
gacccaaatccaattgatagt |
322 |
Q |
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| T |
10819233 |
gacccaaatccaattgatagt |
10819253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 320
Target Start/End: Complemental strand, 30032014 - 30031922
Alignment:
| Q |
228 |
gcttggtagcttgacttctcccttttgagaaagaggaatggtgaagtttccaataacaggaaggtcaataacaagacccaaatccaattgata |
320 |
Q |
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|||||| ||||||| |||||||||||| |||||||||||||||| || ||||||| ||| || |||||||| ||||| | |||||||||||| |
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| T |
30032014 |
gcttgggagcttgatctctcccttttgacaaagaggaatggtgaaattgccaataataggtagatcaataacgagaccaatatccaattgata |
30031922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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