View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2727_high_22 (Length: 333)

Name: NF2727_high_22
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2727_high_22
NF2727_high_22
[»] chr8 (5 HSPs)
chr8 (1-319)||(23084274-23084591)
chr8 (147-319)||(1526579-1526734)
chr8 (150-223)||(1530993-1531066)
chr8 (182-223)||(1529778-1529819)
chr8 (105-157)||(1529725-1529777)
[»] chr1 (3 HSPs)
chr1 (122-254)||(43623758-43623890)
chr1 (122-254)||(43995116-43995248)
chr1 (106-267)||(26412045-26412195)
[»] chr7 (1 HSPs)
chr7 (122-200)||(30217124-30217202)


Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 23084591 - 23084274
Alignment:
Q  1 acccttttctctctcaaacaatggctattcagcaacaaccctctcatgtcactaaaagtaaaaattctatggaagtctttaccacgatgtatccacnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  23084591 acccttttctctctcaaacaatggctattcagcaacaaccctctcatgtcactaaaagtaaaaattctatggaagtctttaccacgatgtatccactttt 23084492  T
Q  101 nnnnac-actcttggcttttgtttatgtggagataacaggttttgccgacaactttgtggagaaaaatctcattgtcatgagattgttgttagttttcac 199  Q
         | |||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  23084491 tttttccactcttggcttttgtttatgt--agataacaggttttgccgacaactttgtggagaataatctcattgtcatgagattgttattagttttcac 23084394  T
Q  200 agttatcacttttctcatcattataattccttccatcttagaaaacccgcctattcctatagttaaaatcgttgctatgatcgtcatgccttgtgtgtcg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23084393 agttatcacttttctcatcattataattccttccatcttagaaaacccgcctattcctatagttaaaatcgttgctatgattgtcatgccttgtgtgtcg 23084294  T
Q  300 tgtgtttcatcggtacttat 319  Q
    ||||||||||||||||||||    
T  23084293 tgtgtttcatcggtacttat 23084274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 147 - 319
Target Start/End: Original strand, 1526579 - 1526734
Alignment:
Q  147 gacaactttgtggagaaaaatctcattgtcatgagattgttgttagttttcacagttatcacttttctcatcattataattccttccatcttagaaaacc 246  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||    
T  1526579 gacaattttgtggagaaaaatctgattgtcatgagattgttgttagttttcacagttatcacttttctcatcatta-----------------gaaaacc 1526661  T
Q  247 cgcctattcctatagttaaaatcgttgctatgatcgtcatgccttgtgtgtcgtgtgtttcatcggtacttat 319  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1526662 cgcctattcctatagttaaaatcgttgctatgattgtcatgccttgtgtgtcgtgtgtttcatcggtacttat 1526734  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 1530993 - 1531066
Alignment:
Q  150 aactttgtggagaaaaatctcattgtcatgagattgttgttagttttcacagttatcacttttctcatcattat 223  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1530993 aactatgtggagaaaaatctgattgttatgagattgttgttagttttcacagttatcacttttctcatcattat 1531066  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 1529778 - 1529819
Alignment:
Q  182 attgttgttagttttcacagttatcacttttctcatcattat 223  Q
    |||||||||||||||||| ||||| |||||||||||| ||||    
T  1529778 attgttgttagttttcactgttattacttttctcatcgttat 1529819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 1529725 - 1529777
Alignment:
Q  105 acactcttggcttttgtttatgtggagataacaggttttgccgacaactttgt 157  Q
    |||||| |||||||||||||| | ||||||||| ||||||  |||||||||||    
T  1529725 acactcatggcttttgtttattttgagataacatgttttggtgacaactttgt 1529777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 122 - 254
Target Start/End: Original strand, 43623758 - 43623890
Alignment:
Q  122 ttatgtggagataacaggttttgccgacaactttgtggagaaaaatctcattgtcatgagattgttgttagttttcacagttatcacttttctcatcatt 221  Q
    |||| |||||||||||||| |||  || ||||||||||||||||||||||| || ||||||||||||||||||||||||  | ||| |||||||||| ||    
T  43623758 ttatttggagataacaggtcttggtgataactttgtggagaaaaatctcatcgttatgagattgttgttagttttcacatctttcaattttctcatcgtt 43623857  T
Q  222 ataattccttccatcttagaaaacccgcctatt 254  Q
    ||| || || || |||||||| |||| ||||||    
T  43623858 atattttctaccctcttagaacacccacctatt 43623890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 122 - 254
Target Start/End: Complemental strand, 43995248 - 43995116
Alignment:
Q  122 ttatgtggagataacaggttttgccgacaactttgtggagaaaaatctcattgtcatgagattgttgttagttttcacagttatcacttttctcatcatt 221  Q
    |||| |||||||||||||| |||  || ||||||||||||||||||||||| || ||||||||||||||||||||||||  | ||| |||||||||| ||    
T  43995248 ttatttggagataacaggtcttggtgataactttgtggagaaaaatctcatcgttatgagattgttgttagttttcacatctttcaattttctcatcgtt 43995149  T
Q  222 ataattccttccatcttagaaaacccgcctatt 254  Q
    ||| || || || |||||||| |||| ||||||    
T  43995148 atattttctaccctcttagaacacccacctatt 43995116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 267
Target Start/End: Original strand, 26412045 - 26412195
Alignment:
Q  106 cactcttggcttttgtttatgtggagataacaggttttgccgacaactttgtggagaaaaatctcattgtcatgagattgttgttagttttcacagttat 205  Q
    ||||| ||||||||||||||   ||||||||| ||||||| ||||||||||||||||||||||||           |||||||||||||| |||| || |    
T  26412045 cactcatggcttttgtttatacagagataacaagttttgctgacaactttgtggagaaaaatctc-----------attgttgttagtttccacaatttt 26412133  T
Q  206 cacttttctcatcattataattccttccatcttagaaaacccgcctattcctatagttaaaa 267  Q
    || ||||||||||| |||| | ||| |||||||||||||||| ||||||| |||||||||||    
T  26412134 caattttctcatcagtatactacctgccatcttagaaaacccacctattcgtatagttaaaa 26412195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 30217202 - 30217124
Alignment:
Q  122 ttatgtggagataacaggttttgccgacaactttgtggagaaaaatctcattgtcatgagattgttgttagttttcaca 200  Q
    |||| ||||||||||||||||||  || |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30217202 ttatttggagataacaggttttggtgataactttgtggagaaaaatctcattgttatgagattgttgttagttttcaca 30217124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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