View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727_high_28 (Length: 247)
Name: NF2727_high_28
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 5652675 - 5652905
Alignment:
| Q |
1 |
attggcatttggagaaggttctcaagaggactgagtgtagtggattgtaatgtattaatggtccgatggagggagtttctaaactttgctcaataataac |
100 |
Q |
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| T |
5652675 |
attggcatttggagaaggttctcaagaggactgagtgtagtggattgtaatgtattaatggtccgatggagggagtttctaaactttgctcaataataac |
5652774 |
T |
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| Q |
101 |
tgagtgtcaacaagttgtcttccttaccaagttcctctgtgaaatatgttatgcatcgagctaatgtaggagctcattccttagctagagcggctatata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5652775 |
tgagtgtcaacaagttgtcttccttaccaagttcctc--tgaaatatgttatgca---agctaatgtaggagctcattccttagctagagcggctatata |
5652869 |
T |
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| Q |
201 |
cttaccttgtgtccagttttttcgattatgttcccc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
5652870 |
cttaccttgtgtccagttttttcgattatgttcccc |
5652905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3022194 - 3022129
Alignment:
| Q |
1 |
attggcatttggagaaggttctcaagaggactgag--tgtagtggattgtaatgtattaatggtcc |
64 |
Q |
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|||||| ||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||| |
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| T |
3022194 |
attggcctttggagaaggctctcaagaggactcagaatgtagtggattgtaatgtatgaatggtcc |
3022129 |
T |
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