View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727_high_4 (Length: 716)
Name: NF2727_high_4
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 283 - 699
Target Start/End: Complemental strand, 40793082 - 40792664
Alignment:
| Q |
283 |
caaatagtggaatttgttggttacatcattgtttttgagaataacagatattttactattgacagtgtcactctaagaaagtacaaaaatattgtgaggg |
382 |
Q |
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| T |
40793082 |
caaatagtggaatttgttggttacatcattgtttttgagaataatagatattttactattgacagtgtcactctaagaaagtacaaaaatattgtgaggg |
40792983 |
T |
|
| Q |
383 |
aaggcagaaaatttctaagaaaaacaataaatactcttgaaattgtggtttttcaaatcatctttgaaattgtaaaatttaaatttaatctgtccatcta |
482 |
Q |
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| T |
40792982 |
aaggcagaaaatttctaagaaaaacaataaatactcttgaaattgtggtttttcaaatgatctttgaaattgtaaaatttaaatttaatccgtccattta |
40792883 |
T |
|
| Q |
483 |
ttggtatttacaagaactaaaataacattaaattaataatataagagataagtttgaaactaagagcacaaatatcgggagtatggacgtggatgctcta |
582 |
Q |
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| T |
40792882 |
ttgatatttacaaggactaaaataacattaacttaataatataaaagacaagtttaaaactaagagcacaaatatcgggagtatggacctggatgctcta |
40792783 |
T |
|
| Q |
583 |
acctaataa--acttagggatgcattggataacaaatatagacaaaagggcaaatctgtaatttcataaatagttttgcaatatttataatgatggaaac |
680 |
Q |
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||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40792782 |
acctaataataatctcaggatgcattggataacaaatatagacaaaagggcaaatctgtaatttcataaatagttttgctatatttataatgatggaaac |
40792683 |
T |
|
| Q |
681 |
taagttgaataatgcttac |
699 |
Q |
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| T |
40792682 |
taagttgaataatgcttac |
40792664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 40793355 - 40793107
Alignment:
| Q |
9 |
gaaaagaaggtaagaagggtgtgatcacaaggagaaaagctaggaaagagagaactattacttgagatttatcaactttgttcatggtcatgattagaga |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40793355 |
gaaaagaaggtaagaagggtgtgatcacaaggagaaaagctaggaaagagagaactattacttgagatttatcaactttgttcatggtcatgattagaga |
40793256 |
T |
|
| Q |
109 |
gtgnnnnnnngtagtgaaagaaactttgaatgatnnnnnnngatgaaggggaatataagagttggtggtagtaaaaagtagtaggaagaaaaagcatggg |
208 |
Q |
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| T |
40793255 |
gtgaaaaaaagtagtgaaagaaactttgaatgataaaaaaagatgaaggggaatataagagttggtggtagtaaaaagtagtaggaagaaaaagcatggg |
40793156 |
T |
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| Q |
209 |
attgagtgtggtgttctagacattatatatatagaggacataaaggtggaa |
259 |
Q |
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| T |
40793155 |
attgagtgtggtgttctagacat--tatatatagaggacataaaggtggaa |
40793107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 40785595 - 40785510
Alignment:
| Q |
14 |
gaaggtaagaagggtgtgatcacaaggagaaaagctaggaaagagagaactattacttgagatttatcaactttgttcatggtcat |
99 |
Q |
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| T |
40785595 |
gaaggtaacaagggtgtgatcacaaggagaagaagtaagatagagagaactataacttgagatttattaactttgttcatggtcat |
40785510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 40785360 - 40785306
Alignment:
| Q |
286 |
atagtggaatttgttggttacatcattgtt-tttgagaataacagatattttact |
339 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||| || | ||||||| |
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| T |
40785360 |
atagtggaaattgttggttacatcattgttgtttgagaataagagttgttttact |
40785306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 40785463 - 40785388
Alignment:
| Q |
181 |
aaaaagtagtaggaagaa--aaagcatgggattgagtgtggtgttctagacattatatatatagaggacataaaggtgg |
257 |
Q |
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|||||||||||||||||| |||||||| || ||||||| | |||||||||| ||||||||| ||||||||||||| |
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| T |
40785463 |
aaaaagtagtaggaagaataaaagcatgagaatgagtgtaggtttctagacat---atatatagatgacataaaggtgg |
40785388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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