View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727_high_7 (Length: 607)
Name: NF2727_high_7
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Complemental strand, 1786254 - 1785649
Alignment:
| Q |
1 |
actgcaacttgctgattatttttcattgtacctttatagaccttacctaacatcgaataaaattcaaataagannnnnnnnn--gttaaccctccggttt |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| | ||||| |
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| T |
1786254 |
actgcaacttgctgattatttttcattgtacctttatagaccttacctaacatcaaataaaattcaaataagacttctttttttgttaaccc-ctggttt |
1786156 |
T |
|
| Q |
99 |
ctaggagaaa-------taacaatctgatgttcggtctagaggtaagtaaggtctgcaaataaatgaatatcttcacttggtttgataaggagaagagtt |
191 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
1786155 |
ctaggagaaaggagtcataacaatctgatgttcggtctagaggtaagtaaggtctgcaaataaatgaatatcttcacttggtttggtaaggagaagactt |
1786056 |
T |
|
| Q |
192 |
aagatttaatataccaaaccagaatttcaagtagtttaaagcagttgaatcatgacctagaaatcttgctgaatcgacgcgatctgataatttagttttt |
291 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| |
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| T |
1786055 |
aagatttaatataccaaaccagaatttcaagcagtttaaagcagttgaatcatgacctagaaatcttaccgaatcgacgcgatccgataatttagttttt |
1785956 |
T |
|
| Q |
292 |
aacatagagaaaaagaagctcacctgaagttcctttcccaatgatattcatttcattgagattgttggtggcagcatacacatccttgataggaattttt |
391 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
1785955 |
aacatagagaaaaagaagctcacctgaagttcctttcccaatgatattcatttcattgagattgttggtggcagcatacacttccttgatagaaattttt |
1785856 |
T |
|
| Q |
392 |
ggacaagaaattttctttaacaaatttccaaatgtcactgaa-aaaagta-----gcacataagcataatattatagcctttatatatgatatggtatct |
485 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| || | || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1785855 |
ggacaagaaattttctttaacaaatttccaaatgtcactgaagaataataattttatacataagcataatattatagcctttatatatgatatggtatct |
1785756 |
T |
|
| Q |
486 |
aatatgagtttttaaaataattttggtcttacctttattttgtagtgaggctaatctgaagaatctaagataaatgatgtatgcagtgataaatgatatc |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1785755 |
aatatgagtttttaaaataattttggtcttacctttattttgtagtgaggctaatctgaagaatctaagataaatgatgtatgcagtgataaatgatatc |
1785656 |
T |
|
| Q |
586 |
aaaatag |
592 |
Q |
| |
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||||||| |
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| T |
1785655 |
aaaatag |
1785649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 328 - 454
Target Start/End: Complemental strand, 1791083 - 1790956
Alignment:
| Q |
328 |
cccaatgatattcatttcattgagattgttggtggcagcatacacatccttgataggaatttttggacaagaaa-ttttctttaacaaatttccaaatgt |
426 |
Q |
| |
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|||||||||||| |||||||| |||| ||| || ||||||||||| |||||||||||||||||||||||||||| |||| ||||| || ||||||||||| |
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| T |
1791083 |
cccaatgatattaatttcattcagatggttagtcgcagcatacacttccttgataggaatttttggacaagaaatttttgtttaataagtttccaaatgt |
1790984 |
T |
|
| Q |
427 |
cactgaaaaaagtagcacataagcataa |
454 |
Q |
| |
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|||||| |||||||| |||||||||||| |
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| T |
1790983 |
cactgagaaaagtagtacataagcataa |
1790956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 575
Target Start/End: Complemental strand, 1790749 - 1790674
Alignment:
| Q |
500 |
aaataattttggtcttacctttattttgtagtgaggctaatctgaagaatctaagataaatgatgtatgcagtgat |
575 |
Q |
| |
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||||||||||| ||||||| | ||||| ||||| |||| | || ||| || |||||||||||||||||||| |||| |
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| T |
1790749 |
aaataattttgatcttaccctcattttttagtggggctgaactaaagcatataagataaatgatgtatgcaatgat |
1790674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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