View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727_high_8 (Length: 544)
Name: NF2727_high_8
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Original strand, 33660377 - 33660913
Alignment:
| Q |
1 |
cagttgctaatagttgaatattctaggatatgagtaaatcatcaacaaaattacaacagaaaccaccagagtagactgattacactgattaacagaagct |
100 |
Q |
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| T |
33660377 |
cagttgctaatagttgaatattctaagatacgagtaaatcatcaacaaaattacaacagaaaccaccagagtagactgattacactgattaacagaagct |
33660476 |
T |
|
| Q |
101 |
aattacaaaagtttgttgaaaaatatattaggatatttgcatttattgcatacgcatgtggtattgtatttatatcagagggccctattttgagttgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33660477 |
aattacaaaagtttgttgaaaaatatattaggatatttgcatttattgcatacgcatgtggtattgtatttatatcagagggccctattttgagttgaaa |
33660576 |
T |
|
| Q |
201 |
tcaagagcccttgtctctaatctattttctaattccttttcctttgactttgagccttcccctcctacaaccaaaccactttgtctctttccgtcttgca |
300 |
Q |
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| T |
33660577 |
tcaagagcccttgtctctaatctattttctaattccttttcctttgactttgagcctttccctcctgcaaccaaaccactttgcctctttccgtcttgca |
33660676 |
T |
|
| Q |
301 |
accacaaaacagcaacagcagtgacctacactctgctgccatccactgcagttcttctccgcaaagagaccgaaagtcccacagccgtgctccaccatga |
400 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33660677 |
accacaaaacagcaacagcagcgacctacactctgctgccatccactgcagttcttctccgcaaagagaccgaaagtcccacagccgtgctcctccatga |
33660776 |
T |
|
| Q |
401 |
gcagaggtctacggccattgcgctcttccgagagtactcttcctccttactcttgaatctcaatctctctgcctcattttattttatgtagatctatcag |
500 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33660777 |
gcagaggtctacggccattgtgctcttccgagagtactcttcctccttactcttgaatctcaatctctctgcctcattttattttatgtagatctatcag |
33660876 |
T |
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| Q |
501 |
tgcagtaaacatgacaaacccaagctctgtctctgct |
537 |
Q |
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| T |
33660877 |
tgcagtaaacaggacaaacccaagctctgtcactgct |
33660913 |
T |
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