View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727_low_10 (Length: 520)
Name: NF2727_low_10
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 731699 - 732058
Alignment:
| Q |
1 |
tttcctacttcgtttccatgtaaatggaaataataagtagtttctaacgttttgtcacactggtcctgttagtccttggttgtatatttatttgactaat |
100 |
Q |
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| T |
731699 |
tttcctacttcgtttccatgtaaatggaaata-taagtagtttctaacgttttgtcacaccggtcctgttagtccttggttgtatatttatttgactaat |
731797 |
T |
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| Q |
101 |
gagacggacggaaacattggagagaaagtaggagagattgtaagatcatgaacgaaattagtggtttactaatttctctgatttttgaagtttttgcaag |
200 |
Q |
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| T |
731798 |
gagacggacggaaacgttggagagaaagtaggagagattgtaagatcat-aacgaaattagcggtttactaatttctctgatttttgaaatttttgcaag |
731896 |
T |
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| Q |
201 |
aagattaatatatccaatgttggatcgctgcttactctaagtagttaaatcttgcgttgtggtttttgtttgatggttaaatttttgttgcctcattcgg |
300 |
Q |
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| T |
731897 |
aagattaatatatccaatgttggatcgctgcttactctaagtagttaaatcttgcgttgtggtttttgtttgatggttaaatttttgttgcctcattcgg |
731996 |
T |
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| Q |
301 |
catttgattggttatgcccgagtagggtttcttgcttctttttgagcaagtgttgtggagac |
362 |
Q |
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| T |
731997 |
catttgattggttatgcccgcgtagggtttcttgcttctttttgagcgagtgttgtggagac |
732058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 359 - 502
Target Start/End: Original strand, 732095 - 732237
Alignment:
| Q |
359 |
agacttctaagagctatgctaccaattggttcatattgttttcattagagactgtaattcatttttacttagattgtaccactcattttaaacatgggat |
458 |
Q |
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| T |
732095 |
agacttctaagagctatgctaccaattggttcatattgttttcattagagactgtaattcatttttacttcgattgtactactcattttaaacatggga- |
732193 |
T |
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| Q |
459 |
tgagtagctcaattgatttaaaccaagggttaagaagttactct |
502 |
Q |
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| T |
732194 |
tgagtagctcaattgatttaaaccaagggttaagaagttactct |
732237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 728263 - 728330
Alignment:
| Q |
19 |
tgtaaatggaaataataagtagtttctaacgttttgtcacactggtcctgttagtccttggttgtatat |
87 |
Q |
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| T |
728263 |
tgtaaacgaaaataataagtagtttctaacgctttgtcacactagttc-ggtagtccttggttatatat |
728330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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