View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727_low_11 (Length: 466)
Name: NF2727_low_11
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 23 - 450
Target Start/End: Original strand, 26611486 - 26611915
Alignment:
| Q |
23 |
tagattattcttttgtatatgtttggttgagtttttatagtcttaaatagatcacacgttctgattctgcagagtcttttcaaacacatttgtttcaagt |
122 |
Q |
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| T |
26611486 |
tagataattcttttgtatatgtttggttgagtttttatagtcttaaatagatcacacgttctgattctgcagagtcttttcaaacacatttgtttcaagt |
26611585 |
T |
|
| Q |
123 |
gctcatacttgcgacattgatgttacacttatgagttgttttgttctcttagaatatggatttgagacaaaagcatctatctccattaacgacaataaga |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26611586 |
gctcatacttgcgacattgatgttacacttatgagttgttttgttctcttagaatatggatttgagacaaaagcatctatctccattaacgacaataaga |
26611685 |
T |
|
| Q |
223 |
tttta-nnnnnnnccaacgatacattactggataatttgaaacacaatttactggcttagacttggtgcaagttgtatgaggacctggttctcaattccc |
321 |
Q |
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| T |
26611686 |
ttttattttttttccaacgaaacattactggataatttgaaacacaatttactggcttagacttggtgcaagttgtatgaggacctggttctcaattccc |
26611785 |
T |
|
| Q |
322 |
agaagtgacaatttactgagtcagataattgacaatataccaaatttaattatctcttgaaag-nnnnnnnnnttcttattcgagactataaataaaggc |
420 |
Q |
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| T |
26611786 |
agaagtgacaatttactgagtcagataattgacaatataccaaatttaattatctcttgaaagaaaaaaaaaattcttattcgagactataaataaaggc |
26611885 |
T |
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| Q |
421 |
caagaggaataccattacctcctacctcct |
450 |
Q |
| |
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| T |
26611886 |
caagaggaataccattacctcctacctcct |
26611915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 26596422 - 26596576
Alignment:
| Q |
66 |
taaatagatcacacgttctgattctgcagagtcttttcaaacacatttgtttcaagtgctcatacttgcgacattgatgttacacttatgagttgttttg |
165 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||| |||| |
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| T |
26596422 |
taaattgatcacacgttctgattctgcagagtcttttcaaacacacttgtttcaagtgcttatacttaagacattgatgttacacttatgagttggtttg |
26596521 |
T |
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| Q |
166 |
ttctcttagaatatggatttgagacaaaagcatctatctccattaacgacaataag |
221 |
Q |
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| T |
26596522 |
ttctc-tagaatatggatttgagacaaaagcatctatctctattaacgacaataag |
26596576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 89 - 313
Target Start/End: Original strand, 26604026 - 26604262
Alignment:
| Q |
89 |
ctgcagagtcttttcaaacacatttgtttcaagtgctcatacttgcgacattgatgttacacttatgagttgttttgttctcttagaatatggat-ttga |
187 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||| |||| |
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| T |
26604026 |
ctgcagagtcttttgaaacacacttgtttcaagtgctcatacttgtgacattgatgttacacttatgagttgtttt-tgttcttagaatatggatattga |
26604124 |
T |
|
| Q |
188 |
gacaaaagcatctatctccattaacgacaataaga--------------ttttannnnnnnccaacgatacattactggataatttgaaacacaatttac |
273 |
Q |
| |
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|| |||||||||||||||||||||||||||||| ||||| | |||||||||||||| |||||||||||||||||||| |
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| T |
26604125 |
aac--aagcatctatctccattaacgacaataagatttattctttctacttttacatttttctaacgatacattactccataatttgaaacacaatttaa |
26604222 |
T |
|
| Q |
274 |
tggcttagacttggtgcaagttgtatgaggacctggttct |
313 |
Q |
| |
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|||||||||||| | ||||||||||||||||||||||||| |
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| T |
26604223 |
tggcttagacttagagcaagttgtatgaggacctggttct |
26604262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 26596679 - 26596721
Alignment:
| Q |
404 |
agactataaataaaggccaagaggaataccattacctcctacc |
446 |
Q |
| |
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||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
26596679 |
agactataaataaagatcaagaggaataccattacttcctacc |
26596721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 26603986 - 26604024
Alignment:
| Q |
23 |
tagattattcttttgtatatgtttggttgagtttttata |
61 |
Q |
| |
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||||| ||||||||| ||||||||||||||||||||||| |
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| T |
26603986 |
tagataattcttttgcatatgtttggttgagtttttata |
26604024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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