View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727_low_12 (Length: 447)
Name: NF2727_low_12
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727_low_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 30 - 447
Target Start/End: Original strand, 3960707 - 3961127
Alignment:
| Q |
30 |
cccagacagcaacccctattacctcaaaaggcaatccttcggattccaaatccactgactcgtagaacaaacaagtcaagatgttcaacctctccaaact |
129 |
Q |
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| T |
3960707 |
cccagaccgcgactcctattacctcaaaaggcaatccttcagattccacatccact----cgtagcacaaacaagtcaggatgttcaacctctccaaact |
3960802 |
T |
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| Q |
130 |
ccaccgctaagataaaactttcaccgcctccgcaatatcttccactgcactaacctcgttcttaaaaatgatttgattcctcgtttgccaaatggccgaa |
229 |
Q |
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| T |
3960803 |
ccaccgctaagataaaactttcaccgcctccacaatatcttccaccgcactaacctcgttcttaaaaatgatttgatttctcgcttgccaaatggcccaa |
3960902 |
T |
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| Q |
230 |
atcgttgcatgccaaataagatgcaaacccttccggatcctcttgtttctaccttctaaacttcaacactcccaatg------caagttaggtggattta |
323 |
Q |
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| T |
3960903 |
atcattgcatgccaaataagacgcaaatccttctggatcctcttgtttctaccttttaaactccaacactcccaatgcacaaacaagttaggaggatata |
3961002 |
T |
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| Q |
324 |
tgaaacagatttc-gaccacataatcaccttataccaaatatcaatcaccttttcacaatggataaaaagatggttagccgattcgtccctcctaccaca |
422 |
Q |
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| T |
3961003 |
tgaaacagatttctaaccacataatcaccttataccaaatatcaatcaccttttcacaatggataaaatgatggttagccgattcgtccctcctaccaca |
3961102 |
T |
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| Q |
423 |
aaacacacataacgaccaagcatcc |
447 |
Q |
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| T |
3961103 |
aaacacgcacaacaacgaagcatcc |
3961127 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 308
Target Start/End: Original strand, 9359434 - 9359539
Alignment:
| Q |
203 |
tgattcctcgtttgccaaatggccgaaatcgttgcatgccaaataagatgcaaacccttccggatcctcttgtttctaccttctaaacttcaacactccc |
302 |
Q |
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| T |
9359434 |
tgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaaccccttgcgaatcttcttgtttctcccttcaatactccaacatgccc |
9359533 |
T |
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| Q |
303 |
aatgca |
308 |
Q |
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| T |
9359534 |
aatgca |
9359539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 424
Target Start/End: Original strand, 43976464 - 43976512
Alignment:
| Q |
376 |
tcacaatggataaaaagatggttagccgattcgtccctcctaccacaaa |
424 |
Q |
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| T |
43976464 |
tcacaatgaataaaaagatggattgccgactcgtccatcctaccacaaa |
43976512 |
T |
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