View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727_low_13 (Length: 423)
Name: NF2727_low_13
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 5 - 405
Target Start/End: Complemental strand, 42849265 - 42848880
Alignment:
| Q |
5 |
tgtggtactacgtgaagacaatgcaaaggattactttgttga-tgataaagttaaaaattaaaattccattttgtcttaaatttttgctctgataagtca |
103 |
Q |
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| T |
42849265 |
tgtggtactacgtgaagacaatgcaaaggattactttgttgaatgataaagttaaaaactaaaattccaatttgtcttaaatttttgctctgataagtca |
42849166 |
T |
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| Q |
104 |
aaggcaaaaagaaaagtggatgacaaaagcatgatttctaatggcagaacaagcatgttgaaatccatgaagggaatagtacttcacatcatcgatcaac |
203 |
Q |
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| T |
42849165 |
aaggcaaaaagaaaagtggatgacaaaagcatgatttctaatggaagaacaagcatgttgaaatccatgaagggaatagtacttcacatc----atcaac |
42849070 |
T |
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| Q |
204 |
aaccttgattttaaacttcgtttccaatttaaatttctagtaaagagataattgtaacaccttctgcagaaaaagagacacgcaatgaattgacaattcc |
303 |
Q |
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| T |
42849069 |
aaccttgattttaaacttcgtttccaatttaaatttctagtaaagagataattgtaacacc-----------aagagacacgcaatgaattgacaattcc |
42848981 |
T |
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| Q |
304 |
tagtaaagaagggaaagaattataagcctaatcaagttatatccatagagaatgcaagaatagaggtttcacaacagcaatggcctgaaactcaccaaat |
403 |
Q |
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| T |
42848980 |
tagtaaagaagggaaagaattataagcctaat-aagttatatccatagagaatgcaagaatagaggtttcacaacagcaatggcctgaaactcaccaaat |
42848882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 255 - 399
Target Start/End: Complemental strand, 42855673 - 42855528
Alignment:
| Q |
255 |
ttgtaacaccttctgcagaaaa-agagacacgcaatgaattgacaattcctagtaaagaagggaaagaattataagcctaatcaagttatatccatagag |
353 |
Q |
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| T |
42855673 |
ttgtaacaccttctgcaaaaaagaaagacacgcaatgaattgacaattcctagtaaagaagggaaagagttataagcctaatcaagttatatctttgggg |
42855574 |
T |
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| Q |
354 |
aatgcaagaatagaggtttcacaacagcaatggcctgaaactcacc |
399 |
Q |
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| T |
42855573 |
aatgcaagaatagaggtttcacaacagcaatggcctgaaattcacc |
42855528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 42856106 - 42856026
Alignment:
| Q |
59 |
aaattaaaattccattttgtcttaaatttttgctctgataagtcaaaggcaaaaagaaaagtggatgacaaaagcatgattt |
140 |
Q |
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| T |
42856106 |
aaattgaaattcc-ttttgtcttgaatttttgctatgataagacaaagccaaaaagaaaagtggatgagaaaagcatgattt |
42856026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 356 - 403
Target Start/End: Complemental strand, 42857164 - 42857117
Alignment:
| Q |
356 |
tgcaagaatagaggtttcacaacagcaatggcctgaaactcaccaaat |
403 |
Q |
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| T |
42857164 |
tgcaagaatagaggtttcacaacagcaatggcctgaaattcaccaaat |
42857117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 42862838 - 42862724
Alignment:
| Q |
47 |
tgataaagttaaaaattaaaattccattttgtcttaaatttttgctctgataagtcaaaggcaaaaagaaaagtggatgacaaaagcatgatttctaatg |
146 |
Q |
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| T |
42862838 |
tgataaaggtaaaaatcgaaattccatgt-gtcttgaatttttgctttgataagacaaaggcaaaaggagaaatggatgagaaaagcataattttcaatg |
42862740 |
T |
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| Q |
147 |
gcagaacaagcatgtt |
162 |
Q |
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| T |
42862739 |
gcaacacaaacatgtt |
42862724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 319
Target Start/End: Complemental strand, 42857226 - 42857184
Alignment:
| Q |
277 |
agagacacgcaatgaattgacaattcctagtaaagaagggaaa |
319 |
Q |
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| T |
42857226 |
agagactcgcaatgaattgacaattcctagtaaagaagggaaa |
42857184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 42857693 - 42857614
Alignment:
| Q |
37 |
actttgttga-tgataaagttaaaaattaaaattccattttgtcttaaatttttgctctgataagtcaaaggcaaaaagaa |
116 |
Q |
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| T |
42857693 |
actttgttgaatgataaaggtaaaaattgaaatttcattt-gtcttgaatttttgctatgataaggaaaaggcaaaaagaa |
42857614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 42861557 - 42861513
Alignment:
| Q |
286 |
caatgaattgacaattcctagtaaagaagggaaagaattataagc |
330 |
Q |
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| T |
42861557 |
caatgaattgtcagttcctagtaaagaagggaaatagttataagc |
42861513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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