View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727_low_14 (Length: 410)
Name: NF2727_low_14
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727_low_14 |
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| [»] scaffold0002 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 30208545 - 30208935
Alignment:
| Q |
1 |
ttacatacaatacaacatgtaactcaaaattcaaacatatatctacaacatgaaataaaaattaacaaaaagatcatatgatgttaccatctgttgctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30208545 |
ttacatacaatacaacatgtaactcaaaattcaaacatatatctacaacatgaaataaaaattaacaaaaagatcatatgatgttaccatctgttgctgt |
30208644 |
T |
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| Q |
101 |
tcaatgcattcagaattctccccctcctgagcagcattgatttcatcagtaacaccaacaccggttgccaccttcttcttcctaccacgtttccccttga |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30208645 |
tcaatgcattcaggattctccccctcctgagcagcattgatttcatcagtaacaccaacaccggttgccaccttcttcttcctaccacgtttccccttaa |
30208744 |
T |
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| Q |
201 |
tcttcttaacttccagctcctcctctacatctgacaagtaatcctcgttcaatgatctgctactcttcttggcacgctcacttcttctcacgatttcgcc |
300 |
Q |
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| T |
30208745 |
tcttcttaacttccagctcctcctctacatctaacaagtaatcctcgttcaatgatctgctactcttcttggcacgctcacttcttctcacgatttcgcc |
30208844 |
T |
|
| Q |
301 |
tgtttcggcttccttccccgtttttctctttctgccacgtttctttgccggaggagcggcagcatcaacagaagcttcatccggagcagct |
391 |
Q |
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| T |
30208845 |
tgtttcggcttccttctccgtttttctctttctgccacgtttctttgccggaggagcggcagcatcaacagaagcttcatcaggagcagct |
30208935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 306
Target Start/End: Original strand, 410994 - 411099
Alignment:
| Q |
201 |
tcttcttaacttccagctcctcctctacatctgacaagtaatcctcgttcaatgatctgctactcttcttggcacgctcacttcttctcacgatttcgcc |
300 |
Q |
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||||||| ||||||| |||||||| |||||||||| |||||| || ||||||||||| ||||||||||||| || ||||| ||||||| |||||| |
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| T |
410994 |
tcttcttcacttccacttcctcctccacatctgacatgtaatcatccttcaatgatctactactcttcttggggcgttcactctttctcacaccttcgcc |
411093 |
T |
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| Q |
301 |
tgtttc |
306 |
Q |
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|||||| |
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| T |
411094 |
tgtttc |
411099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 422487 - 422545
Alignment:
| Q |
28 |
aattcaaacatatatctacaacatgaaataaaaattaacaaaaagatcatatgatgtta |
86 |
Q |
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| T |
422487 |
aattcaaacatatatctacaaagtgaaattaaaattagcaaaaagatcatgtgatgtta |
422545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 426477 - 426547
Alignment:
| Q |
9 |
aatacaacatgtaactcaaaattcaaacatatatctacaacatgaaataaaaattaacaaaaagatcatat |
79 |
Q |
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||||||||||||||||| || ||||||| |||||||||| |||||| ||||||| |||||| ||||||| |
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| T |
426477 |
aatacaacatgtaactccaagctcaaacacatatctacaaagtgaaattaaaattagcaaaaatatcatat |
426547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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