View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727_low_15 (Length: 399)
Name: NF2727_low_15
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 49729118 - 49729485
Alignment:
| Q |
19 |
cctcaagatcatcagagtataacactcacacatctcaggatttgtattcttcaagtaagtaattcaataagtttctgatgacaatgacagtgtgttgtga |
118 |
Q |
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| T |
49729118 |
cctcaagatcatcagagtataacactcacacatctcaggatttgtattcttcaagtaagtaattcaataagtttctgatgacaatgacagtgtgttgt-- |
49729215 |
T |
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| Q |
119 |
acttgtgatcttagacaaactatgtggcccaggaaaactttgggatatgctttttctaactaccactttatagattttgatttgttgcggtcacaaattt |
218 |
Q |
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| T |
49729216 |
------gatcttagacaaactatgtggcccaggaaaactttgggatatgctttttctaactaccactttatagattttgatttgttgcggtcacaaattt |
49729309 |
T |
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| Q |
219 |
catgcattcacgtagtcagaacattagttaaaagttcagaaactaagaagattttgatttttaaactctaaattaccgagcttgcaatctgaatcatccg |
318 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49729310 |
catgcattcacgtagtcggaacatcagttaaaagttcagaaactaagaagattttgatttttaaactctaaattaccgagcttgcaatctgaatcatccg |
49729409 |
T |
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| Q |
319 |
attgagggtcacaaaagtactaactgcgttgactgcatataatctgtgactgaagcaaattctaattcttctcact |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49729410 |
attgagggtcacaaaagtactaactgcgttgactgcatataatctgtgactgaagcaaattctaattcttatcact |
49729485 |
T |
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