View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727_low_18 (Length: 378)
Name: NF2727_low_18
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 8e-74; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 139 - 359
Target Start/End: Complemental strand, 14481734 - 14481514
Alignment:
| Q |
139 |
atgttggctactcatcgtcgttcagcttttctctatttcaaggccttaactttcttaccaaccccaaaaccttaccctctttttcatcactaccaatcac |
238 |
Q |
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| T |
14481734 |
atgttggctgcacatcgttatacaccttttctctatctcaaggccctaactttcttaccaaccccaaaaccttaccctcttttccatcgataccaattac |
14481635 |
T |
|
| Q |
239 |
cgacattttctcttcctttttgcaccaatacttcagattcaacctcttttgcagtgtcatacctcgtccacaatttgggcttttccccacaatttgcttc |
338 |
Q |
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| T |
14481634 |
caacattttctcttcctttttgcaccaatacttcagattcaacctcttttgcagtctcatacctcatcaacaattttggcttttccccacaatttgcttc |
14481535 |
T |
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| Q |
339 |
caaactttcctccatttacaa |
359 |
Q |
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|||||||| |||| |||||| |
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| T |
14481534 |
caaactttgttccacttacaa |
14481514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 14481814 - 14481738
Alignment:
| Q |
19 |
caagcaccccttctcccgggaaattttcgaacccaactcaggtattcttattccttcattcatctttctccattttc |
95 |
Q |
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| T |
14481814 |
caagcaccccttctcccgggaaattttcgaacccaactcaggtattcttattccttcattcatctttctccattttc |
14481738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 255 - 366
Target Start/End: Original strand, 14484995 - 14485106
Alignment:
| Q |
255 |
tttttgcaccaatacttcagattcaacctcttttgcagtgtcatacctcgtccacaatttgggcttttccccacaatttgcttccaaactttcctccatt |
354 |
Q |
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| T |
14484995 |
tttttccaccaacacttcagattcaaccttttttgccgtctcttacctcatcaacaattttggcttttccccacaatttgcttccaaactttcctccact |
14485094 |
T |
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| Q |
355 |
tacaatattcat |
366 |
Q |
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|||||| ||||| |
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| T |
14485095 |
tacaatgttcat |
14485106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 255 - 360
Target Start/End: Complemental strand, 14476436 - 14476331
Alignment:
| Q |
255 |
tttttgcaccaatacttcagattcaacctcttttgcagtgtcatacctcgtccacaatttgggcttttccccacaatttgcttccaaactttcctccatt |
354 |
Q |
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|||||||||||| ||||||||||||||||||||||| || || |||||| || ||||||| |||||| |||||||| |||||||||||||||||||| | |
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| T |
14476436 |
tttttgcaccaacacttcagattcaacctcttttgctgtctcctacctcatcaacaattttggctttgacccacaatctgcttccaaactttcctccact |
14476337 |
T |
|
| Q |
355 |
tacaat |
360 |
Q |
| |
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|||||| |
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| T |
14476336 |
tacaat |
14476331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 168 - 344
Target Start/End: Complemental strand, 14165679 - 14165509
Alignment:
| Q |
168 |
tctctatttcaaggccttaactttcttaccaaccccaaaaccttaccctctttttc-atcactaccaatcaccgacattttctcttcctttttgcaccaa |
266 |
Q |
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||||||| ||||||||||||||||||||||| ||||||| ||| |||||||||| | |||| ||| || |||||||||| | ||| |||||||| |
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| T |
14165679 |
tctctatctcaaggccttaactttcttaccagccccaaaccctaaccctcttttcccatcattactaa-------cattttctctacatttctgcaccaa |
14165587 |
T |
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| Q |
267 |
tacttcagattcaacctcttttgcagtgtcatacctcgtccacaatttgggcttttccccacaatttgcttccaaact |
344 |
Q |
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| T |
14165586 |
cacttcaaattcaacctcatttgcagcctcttacctcattcacaattttgggtttaccccacaatttgcttccaaact |
14165509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 344
Target Start/End: Original strand, 14501923 - 14502025
Alignment:
| Q |
242 |
cattttctcttcctttttgcaccaatacttcagattcaacctcttttgcagtgtcatacctcgtccacaatttgggcttttccccacaatttgcttccaa |
341 |
Q |
| |
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|||||||||||| ||| |||||||| ||||||||||||||||| ||| | || ||||||||| || ||||||| |||||| |||||||||||||||||| |
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| T |
14501923 |
cattttctcttcatttctgcaccaacacttcagattcaacctcattttctgtctcatacctcatcaacaattttggctttgacccacaatttgcttccaa |
14502022 |
T |
|
| Q |
342 |
act |
344 |
Q |
| |
|
||| |
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| T |
14502023 |
act |
14502025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 259 - 344
Target Start/End: Original strand, 14144671 - 14144756
Alignment:
| Q |
259 |
tgcaccaatacttcagattcaacctcttttgcagtgtcatacctcgtccacaatttgggcttttccccacaatttgcttccaaact |
344 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| || |||||| | |||||||| || ||| ||||||||||||||||||||| |
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| T |
14144671 |
tgcaccaacccttcagattcaacctcttttgcagcctcctacctcattcacaattttgggtttgacccacaatttgcttccaaact |
14144756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 259 - 344
Target Start/End: Original strand, 14152653 - 14152738
Alignment:
| Q |
259 |
tgcaccaatacttcagattcaacctcttttgcagtgtcatacctcgtccacaatttgggcttttccccacaatttgcttccaaact |
344 |
Q |
| |
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|||||||| |||||||||||||||||| ||||||| || |||||| || ||||||| || ||| |||||||| |||||||||||| |
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| T |
14152653 |
tgcaccaacacttcagattcaacctctcttgcagtctcctacctcatcaacaattttggttttgacccacaatctgcttccaaact |
14152738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 242 - 359
Target Start/End: Original strand, 14494436 - 14494553
Alignment:
| Q |
242 |
cattttctcttcctttttgcaccaatacttcagattcaacctcttttgcagtgtcatacctcgtccacaatttgggcttttccccacaatttgcttccaa |
341 |
Q |
| |
|
|||||||||| | ||| |||||||| |||| ||||||||||||||||| || ||||||||| | ||||| || || ||| |||||||| ||||||||| |
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| T |
14494436 |
cattttctctccatttatgcaccaacgcttctgattcaacctcttttgctgtctcatacctcattcacaagtttgggtttgacccacaatctgcttccaa |
14494535 |
T |
|
| Q |
342 |
actttcctccatttacaa |
359 |
Q |
| |
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||| | ||||| |||||| |
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| T |
14494536 |
actctgctccacttacaa |
14494553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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