View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727_low_2 (Length: 790)
Name: NF2727_low_2
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 27718443 - 27718187
Alignment:
| Q |
12 |
tattcttgttgtggggccatataaatgcatcttcaatggttgaata--caactatatgatagagatttcttgttataaaattattttaaaggttgaatac |
109 |
Q |
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| T |
27718443 |
tattcttgttgtggggccgtataaatgcatcttcaatggttgaatatacaactatatgatagagatttcttgttataaaattacttcaaaggttgaatac |
27718344 |
T |
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| Q |
110 |
aaatttttattttagaagctacttcttaacaacttctcaattgattttctttctacagatgttttatttgtannnnnnnnaaaggaacgttttatttgat |
209 |
Q |
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| T |
27718343 |
aaatttttattttagaagctacttcttaacaacttctcaattgattttctttttacagatgttttatttgtattttttttaaaggaacgttttatttgat |
27718244 |
T |
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| Q |
210 |
tcaactagtaatttatttatgcaacactataatgataaaatattatattataaaaaa |
266 |
Q |
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| T |
27718243 |
tgaactagtaatttatttatgcaacactataatgataaaatattatattataaaaaa |
27718187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 520 - 772
Target Start/End: Complemental strand, 27714697 - 27714434
Alignment:
| Q |
520 |
cgagtaatggcagtctaaagaacctcggttggttgacgtggcaaaattccattgaggaagaaacgattgtatagagaacagacacctcgc---------- |
609 |
Q |
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| T |
27714697 |
cgagtaatgggagtctaaagagcctcggttggttgacgtcgcaaaattccattgaggaagaaacgattgtatagagaacagacacctcgcccgacaaaag |
27714598 |
T |
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| Q |
610 |
---ttttccataatcaatataaatagagccttgcagcgtcatttgaaaatattcactcaataatgaagtttagagaaatcaagcttaggagagagtaaaa |
706 |
Q |
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| T |
27714597 |
agcttttccataatc--tataaatagaggcttgcagcgtcatttgaaaatattcactcaataatgaagtttagagaaatcaagcttaggagagagtaaaa |
27714500 |
T |
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| Q |
707 |
gggcaaatgtgaggtggagacgtcaaaggcttgtagatcaagccgacgactaatgcaacatcttag |
772 |
Q |
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| T |
27714499 |
gggcaaatatgaggtggagacgtcaaaggcttgtagatcaagccgacgactaatgcaacatcttag |
27714434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 343 - 513
Target Start/End: Complemental strand, 27718080 - 27717911
Alignment:
| Q |
343 |
aatattaggttaacatcttttaggctgatatatttaaacgcaataatatccccgcatccgatttgaatccgctttgcaaagcaatctaatctccaaccgc |
442 |
Q |
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| T |
27718080 |
aatattaggttaacatcttttaggctaatatatttaaacgcaataatatccccccatccaatttgcatccgctt-gcaaagcaatctaatctccaaccgc |
27717982 |
T |
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| Q |
443 |
cgtttgcactttcttcctttgctttccacataaacattcacgttactatggctccaagaaatcaaaaggtt |
513 |
Q |
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| T |
27717981 |
catttgcactttcttcctttgctttcaacataaacattcacgttactatggctccaacaaatcaaaaggtt |
27717911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 415 - 478
Target Start/End: Complemental strand, 27085020 - 27084957
Alignment:
| Q |
415 |
tttgcaaagcaatctaatctccaaccgccgtttgcactttcttcctttgctttccacataaaca |
478 |
Q |
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| T |
27085020 |
tttgcaaaggaatctcatctccaaccgccgtttgcactctcttcttctgctttcaacataaaca |
27084957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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