View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2727_low_20 (Length: 357)

Name: NF2727_low_20
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2727_low_20
NF2727_low_20
[»] chr3 (5 HSPs)
chr3 (1-339)||(35963537-35963875)
chr3 (195-300)||(39538224-39538329)
chr3 (16-72)||(47968323-47968381)
chr3 (17-69)||(17583229-17583282)
chr3 (17-72)||(36637170-36637226)
[»] chr4 (7 HSPs)
chr4 (17-65)||(20004775-20004824)
chr4 (16-69)||(1237530-1237584)
chr4 (17-62)||(47683472-47683518)
chr4 (25-69)||(47393569-47393614)
chr4 (9-52)||(31444949-31444993)
chr4 (19-70)||(54055324-54055376)
chr4 (17-65)||(54485769-54485817)
[»] chr1 (8 HSPs)
chr1 (17-69)||(49840478-49840531)
chr1 (17-68)||(6294664-6294716)
chr1 (22-69)||(15881357-15881405)
chr1 (36-70)||(42470420-42470454)
chr1 (17-65)||(10427362-10427411)
chr1 (21-65)||(35633000-35633045)
chr1 (17-69)||(38340125-38340178)
chr1 (18-65)||(27348981-27349029)
[»] chr6 (4 HSPs)
chr6 (16-67)||(8866863-8866915)
chr6 (17-65)||(32279611-32279660)
chr6 (36-69)||(32938886-32938919)
chr6 (21-69)||(4996327-4996375)
[»] chr5 (7 HSPs)
chr5 (35-69)||(14861859-14861893)
chr5 (17-69)||(16321019-16321072)
chr5 (17-69)||(42522714-42522767)
chr5 (24-67)||(31364229-31364272)
chr5 (16-69)||(833881-833935)
chr5 (36-68)||(11832445-11832477)
chr5 (16-63)||(37516884-37516932)
[»] chr8 (6 HSPs)
chr8 (17-69)||(4438553-4438606)
chr8 (16-71)||(31261299-31261355)
chr8 (16-69)||(6629168-6629226)
chr8 (12-69)||(12054104-12054162)
chr8 (16-69)||(41372493-41372547)
chr8 (35-71)||(43833451-43833487)
[»] chr7 (4 HSPs)
chr7 (17-69)||(35338373-35338426)
chr7 (9-69)||(38237472-38237533)
chr7 (36-69)||(1292098-1292131)
chr7 (36-65)||(44410550-44410579)
[»] scaffold0018 (1 HSPs)
scaffold0018 (16-69)||(36811-36865)
[»] chr2 (5 HSPs)
chr2 (16-65)||(35468748-35468798)
chr2 (17-65)||(11694210-11694259)
chr2 (16-69)||(26751564-26751617)
chr2 (21-69)||(30675540-30675589)
chr2 (33-65)||(19112913-19112945)
[»] scaffold1793 (1 HSPs)
scaffold1793 (36-68)||(583-615)
[»] scaffold1777 (1 HSPs)
scaffold1777 (18-69)||(596-648)
[»] scaffold0013 (1 HSPs)
scaffold0013 (17-69)||(97034-97085)


Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 35963875 - 35963537
Alignment:
Q  1 ttcaaataacacaaccaatataacaaatgtaatataattcttatattttttaatgacaccaacaatatatcaagcgagccaatataattctttctaagac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||    
T  35963875 ttcaaataacacaaccaatataacaaatgtaatataattcttaaattttttaatgacaccaacaatatatcgaacgagcgaatataattctttctaagac 35963776  T
Q  101 cattacttgagtacgtggggtaaataaacccggattgagttagattttaatgggattgaacaattatgcacaaaatccatcgttttctatgtgacaccac 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35963775 cattacttgagtacgtggggtgaataaacccggattgagttagattttaatgggattgaacaattatgcacaaaatccatcgttttctatgtgacaccac 35963676  T
Q  201 taagtgcaaagaggaatgagggaaaaagcgcattcatagtggagatgcacggcaaaaaccgtgtcaatggaccacaccacaaaggaggaaactcatagtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35963675 taagtgcaaagaggaatgagggaaaaagcgcattcatagtggagatgcacgccaaaaaccgtgtcaatggaccacaccacaaatgaggaaactcatagtc 35963576  T
Q  301 caatgcaagtcccatgatccctttaataagggagactca 339  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  35963575 caatacaagtcccatgatccctttaataagggagactca 35963537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 300
Target Start/End: Complemental strand, 39538329 - 39538224
Alignment:
Q  195 caccactaagtgcaaagaggaatgagggaaaaagcgcattcatagtggagatgcacggcaaaaaccgtgtcaatggaccacaccacaaaggaggaaactc 294  Q
    ||||||||| ||||||| || |||| | || || | ||||| | |||||||||| |  ||||||||||||||||||||||| |||  ||||| |||||||    
T  39538329 caccactaactgcaaagtgggatgacgaaagaaacacattcgtggtggagatgcgcaacaaaaaccgtgtcaatggaccaccccatgaaggacgaaactc 39538230  T
Q  295 atagtc 300  Q
    ||||||    
T  39538229 atagtc 39538224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 47968381 - 47968323
Alignment:
Q  16 caatataacaaatgtaatat-aattcttatatttttt-aatgacaccaacaatatatca 72  Q
    |||||||||||||||||||| ||||||||| |||||| || ||||||||| ||||||||    
T  47968381 caatataacaaatgtaatataaattcttatcttttttgaaagacaccaacgatatatca 47968323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 17583282 - 17583229
Alignment:
Q  17 aatataacaaatgtaatataa-ttcttatattttttaatgacaccaacaatata 69  Q
    |||||||||||| ||||| || ||||||| ||||||||| ||||||||||||||    
T  17583282 aatataacaaatataataaaaattcttatcttttttaataacaccaacaatata 17583229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 36637226 - 36637170
Alignment:
Q  17 aatataacaaatgtaatataa-ttcttatattttttaatgacaccaacaatatatca 72  Q
    |||||||||||| ||||| || ||||||| ||||||||| |||| ||||||||||||    
T  36637226 aatataacaaatataataaaaattcttatcttttttaataacacaaacaatatatca 36637170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 20004775 - 20004824
Alignment:
Q  17 aatataacaaatgtaatataa-ttcttatattttttaatgacaccaacaa 65  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  20004775 aatataacaaatataatataaattcttatattttttaatgacaccaacaa 20004824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 1237584 - 1237530
Alignment:
Q  16 caatataacaaatgtaatataa-ttcttatattttttaatgacaccaacaatata 69  Q
    |||||||  |||| |||||||| ||||||| ||||||||||||||||||||||||    
T  1237584 caatatagaaaatataatataaattcttatcttttttaatgacaccaacaatata 1237530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 47683518 - 47683472
Alignment:
Q  17 aatataacaaatgtaatataa-ttcttatattttttaatgacaccaa 62  Q
    |||||||||||| |||||||| ||||||||||||| |||||||||||    
T  47683518 aatataacaaatataatataaattcttatatttttgaatgacaccaa 47683472  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 47393614 - 47393569
Alignment:
Q  25 aaatgtaatataatt-cttatattttttaatgacaccaacaatata 69  Q
    |||| |||||||||| ||||||||||| ||||||||||||||||||    
T  47393614 aaatataatataatttcttatatttttgaatgacaccaacaatata 47393569  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 31444949 - 31444993
Alignment:
Q  9 acacaaccaatataacaaatgtaatat-aattcttatatttttta 52  Q
    |||||| ||||||||||||| |||||| |||||||||||||||||    
T  31444949 acacaaacaatataacaaatataatataaattcttatatttttta 31444993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 54055376 - 54055324
Alignment:
Q  19 tataacaaatgtaatataa-ttcttatattttttaatgacaccaacaatatat 70  Q
    |||||||||| |||||||| ||||||||||||| || ||||||||||| ||||    
T  54055376 tataacaaatataatataaattcttatatttttgaacgacaccaacaaaatat 54055324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 54485817 - 54485769
Alignment:
Q  17 aatataacaaatgtaatataattcttatattttttaatgacaccaacaa 65  Q
    |||||||| ||| |||||||||||| || ||||| ||||||||||||||    
T  54485817 aatataactaatataatataattctaatctttttgaatgacaccaacaa 54485769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 49840478 - 49840531
Alignment:
Q  17 aatataacaaatgtaatata-attcttatattttttaatgacaccaacaatata 69  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||| |||||    
T  49840478 aatataacaaatataatatacattcttatattttttaatgacaccaacgatata 49840531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 6294664 - 6294716
Alignment:
Q  17 aatataacaaatgtaatataa-ttcttatattttttaatgacaccaacaatat 68  Q
    |||||||| |||||||||||| ||||||||||||||| |||||| ||||||||    
T  6294664 aatataacgaatgtaatataaattcttatattttttattgacactaacaatat 6294716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 15881405 - 15881357
Alignment:
Q  22 aacaaatgtaatat-aattcttatattttttaatgacaccaacaatata 69  Q
    ||||||| |||||| |||||||||||||||| |||||||||||||||||    
T  15881405 aacaaatataatattaattcttatatttttttatgacaccaacaatata 15881357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 42470420 - 42470454
Alignment:
Q  36 aattcttatattttttaatgacaccaacaatatat 70  Q
    ||||||||||||||||||||||| |||||||||||    
T  42470420 aattcttatattttttaatgacaacaacaatatat 42470454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 10427411 - 10427362
Alignment:
Q  17 aatataacaaatgtaatataa-ttcttatattttttaatgacaccaacaa 65  Q
    |||||||||||| |||||||| ||||||| ||||| ||||||||||||||    
T  10427411 aatataacaaatataatataagttcttatctttttaaatgacaccaacaa 10427362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 35633045 - 35633000
Alignment:
Q  21 taacaaatgtaatataa-ttcttatattttttaatgacaccaacaa 65  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||||    
T  35633045 taacaaatataatataaattcttatattttttaataacaccaacaa 35633000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 38340178 - 38340125
Alignment:
Q  17 aatataacaaatgtaat-ataattcttatattttttaatgacaccaacaatata 69  Q
    ||||||||||||||||| | ||||||||| ||||||||| ||||||| ||||||    
T  38340178 aatataacaaatgtaataaaaattcttatcttttttaataacaccaataatata 38340125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 27349029 - 27348981
Alignment:
Q  18 atataacaaatgtaatataa-ttcttatattttttaatgacaccaacaa 65  Q
    ||||||||||| |||||||| || |||||||||| ||||||||||||||    
T  27349029 atataacaaatataatataaattattatatttttgaatgacaccaacaa 27348981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 8866863 - 8866915
Alignment:
Q  16 caatataacaaatgtaatataa-ttcttatattttttaatgacaccaacaata 67  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||||||||||||    
T  8866863 caatataacaaatataatataaattcttatcttttttaatgacaccaacaata 8866915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 32279611 - 32279660
Alignment:
Q  17 aatataacaaatgtaatataa-ttcttatattttttaatgacaccaacaa 65  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||||||||    
T  32279611 aatataacaaatataatataaattcttatcttttttaatgacaccaacaa 32279660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 32938919 - 32938886
Alignment:
Q  36 aattcttatattttttaatgacaccaacaatata 69  Q
    ||||||||||||||||||||||||||||||||||    
T  32938919 aattcttatattttttaatgacaccaacaatata 32938886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 4996327 - 4996375
Alignment:
Q  21 taacaaatgtaatataattcttatattttttaatgacaccaacaatata 69  Q
    |||||||| ||||||||||||||| |||||||||  ||| |||||||||    
T  4996327 taacaaatttaatataattcttatcttttttaatatcactaacaatata 4996375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 14861859 - 14861893
Alignment:
Q  35 taattcttatattttttaatgacaccaacaatata 69  Q
    |||||||||||||||||||||||||||||||||||    
T  14861859 taattcttatattttttaatgacaccaacaatata 14861893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 16321019 - 16321072
Alignment:
Q  17 aatataacaaatgtaatataatt-cttatattttttaatgacaccaacaatata 69  Q
    ||||||||||||  ||||||||| ||||||||||| ||||||||||||||||||    
T  16321019 aatataacaaatacaatataatttcttatatttttcaatgacaccaacaatata 16321072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 42522714 - 42522767
Alignment:
Q  17 aatataacaaatgtaatataa-ttcttatattttttaatgacaccaacaatata 69  Q
    |||||||||||| ||||| || ||||||||||||||||| ||||||||||||||    
T  42522714 aatataacaaatataataaaaattcttatattttttaataacaccaacaatata 42522767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 31364229 - 31364272
Alignment:
Q  24 caaatgtaatataattcttatattttttaatgacaccaacaata 67  Q
    |||||||||||||||| |||||||||||||  ||||||||||||    
T  31364229 caaatgtaatataattattatattttttaaaaacaccaacaata 31364272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 833935 - 833881
Alignment:
Q  16 caatataacaaatgtaatataa-ttcttatattttttaatgacaccaacaatata 69  Q
    ||||||||||||| |||| ||| ||||||| ||||| ||||||||||||||||||    
T  833935 caatataacaaatataatctaaattcttatctttttgaatgacaccaacaatata 833881  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 11832477 - 11832445
Alignment:
Q  36 aattcttatattttttaatgacaccaacaatat 68  Q
    ||||||||| |||||||||||||||||||||||    
T  11832477 aattcttatcttttttaatgacaccaacaatat 11832445  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 37516884 - 37516932
Alignment:
Q  16 caatataacaaatgtaatataa-ttcttatattttttaatgacaccaac 63  Q
    ||||||| ||||| |||||||| ||||||||||||| ||||||||||||    
T  37516884 caatatatcaaatataatataaattcttatatttttgaatgacaccaac 37516932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 4438606 - 4438553
Alignment:
Q  17 aatataacaaatgtaatataa-ttcttatattttttaatgacaccaacaatata 69  Q
    |||||||||||| |||||||| ||||||| ||||||||||| ||||||||||||    
T  4438606 aatataacaaatataatataaattcttatcttttttaatgataccaacaatata 4438553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 31261299 - 31261355
Alignment:
Q  16 caatataacaaatgtaatataatt-cttatattttttaatgacaccaacaatatatc 71  Q
    ||||||||||||| |||||||||| ||||| ||||||||||||| |||||| |||||    
T  31261299 caatataacaaatataatataatttcttatcttttttaatgacatcaacaaaatatc 31261355  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 6629226 - 6629168
Alignment:
Q  16 caatataacaaatgtaatataatt-----cttatattttttaatgacaccaacaatata 69  Q
    ||||||||||||| ||||||||||     | ||||||||||||||||||||||||||||    
T  6629226 caatataacaaatataatataattaaattcctatattttttaatgacaccaacaatata 6629168  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 12054104 - 12054162
Alignment:
Q  12 caaccaatataacaaatgtaatat-aattcttatattttttaatgacaccaacaatata 69  Q
    |||||||||| | |||| |||||| |||||||||| |||||||||||||||| ||||||    
T  12054104 caaccaatattaaaaatataatatcaattcttataatttttaatgacaccaataatata 12054162  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 41372547 - 41372493
Alignment:
Q  16 caatataacaaatgtaatataa-ttcttatattttttaatgacaccaacaatata 69  Q
    |||||||||| || |||||||| ||||||| |||||||||||| |||||||||||    
T  41372547 caatataacagatataatataaattcttattttttttaatgacgccaacaatata 41372493  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 43833487 - 43833451
Alignment:
Q  35 taattcttatattttttaatgacaccaacaatatatc 71  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  43833487 taattcttatctttttgaatgacaccaacaatatatc 43833451  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 35338426 - 35338373
Alignment:
Q  17 aatataacaaatgtaatataa-ttcttatattttttaatgacaccaacaatata 69  Q
    ||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||    
T  35338426 aatataataaatataatataaattcttatcttttttaatgacaccaacaatata 35338373  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 38237472 - 38237533
Alignment:
Q  9 acacaaccaatataacaaatgtaatataa-ttcttatattttttaatgacaccaacaatata 69  Q
    |||||| ||||||||||||| |||||||| ||||||| ||||| ||||||||||||| ||||    
T  38237472 acacaaacaatataacaaatataatataaattcttatctttttcaatgacaccaacagtata 38237533  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 1292098 - 1292131
Alignment:
Q  36 aattcttatattttttaatgacaccaacaatata 69  Q
    ||||||||| ||||||||||||||||||||||||    
T  1292098 aattcttatcttttttaatgacaccaacaatata 1292131  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 44410550 - 44410579
Alignment:
Q  36 aattcttatattttttaatgacaccaacaa 65  Q
    ||||||||||||||||||||||||||||||    
T  44410550 aattcttatattttttaatgacaccaacaa 44410579  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 36865 - 36811
Alignment:
Q  16 caatataacaaatgtaatataa-ttcttatattttttaatgacaccaacaatata 69  Q
    ||||||||||||| ||||| || ||||||| ||||||||| ||||||||||||||    
T  36865 caatataacaaatataataaaaattcttatcttttttaataacaccaacaatata 36811  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 35468798 - 35468748
Alignment:
Q  16 caatataacaaatgtaatataa-ttcttatattttttaatgacaccaacaa 65  Q
    |||||||| |||| |||||||| ||||||||||||||| ||||||||||||    
T  35468798 caatataataaatataatataaattcttatattttttattgacaccaacaa 35468748  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 11694210 - 11694259
Alignment:
Q  17 aatataacaaatgtaatataa-ttcttatattttttaatgacaccaacaa 65  Q
    |||||||||||| |||||||| || |||||||||| ||||||||||||||    
T  11694210 aatataacaaatataatataaatttttatatttttgaatgacaccaacaa 11694259  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 26751564 - 26751617
Alignment:
Q  16 caatataacaaatgtaatataattcttatattttttaatgacaccaacaatata 69  Q
    ||||||||||| | |||||||| ||||||| |||| ||||||| ||||||||||    
T  26751564 caatataacaagtataatataaatcttataattttgaatgacatcaacaatata 26751617  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 30675540 - 30675589
Alignment:
Q  21 taacaaatgtaatataat-tcttatattttttaatgacaccaacaatata 69  Q
    |||||||| ||||||||  |||||||||||||||| ||||||||||||||    
T  30675540 taacaaatataatataaactcttatattttttaataacaccaacaatata 30675589  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 19112913 - 19112945
Alignment:
Q  33 tataattcttatattttttaatgacaccaacaa 65  Q
    |||||||||||||||||||| ||||||||||||    
T  19112913 tataattcttatattttttattgacaccaacaa 19112945  T

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Target: scaffold1793 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1793
Description:

Target: scaffold1793; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 583 - 615
Alignment:
Q  36 aattcttatattttttaatgacaccaacaatat 68  Q
    ||||||||||||||||||||||||||| |||||    
T  583 aattcttatattttttaatgacaccaaaaatat 615  T

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Target: scaffold1777 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1777
Description:

Target: scaffold1777; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 648 - 596
Alignment:
Q  18 atataacaaatgtaatataa-ttcttatattttttaatgacaccaacaatata 69  Q
    ||||||||||| |||||||| ||||||||||||| ||| | ||||||||||||    
T  648 atataacaaatataatataaattcttatatttttcaataataccaacaatata 596  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 97085 - 97034
Alignment:
Q  17 aatataacaaatgtaatataattcttatattttttaatgacaccaacaatata 69  Q
    |||||||||||| ||| | ||||||||| ||||||||| ||||||||||||||    
T  97085 aatataacaaatataacaaaattcttat-ttttttaatcacaccaacaatata 97034  T

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