View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727_low_3 (Length: 784)
Name: NF2727_low_3
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Original strand, 28102355 - 28102945
Alignment:
| Q |
1 |
aactctgctgacagattttcttgtgtccccctctcttattcaagatcaaccaagttttgtggacatgccctttataaaatatataagtctagtcatgtca |
100 |
Q |
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| T |
28102355 |
aactctgctgacagattttcttgtgtccccctctcttattcaagatcaaccaagttttgtggacatgccctttataaaatatataagtctagtcatgtca |
28102454 |
T |
|
| Q |
101 |
tgagaaggttacttgtactgcatnnnnnnntaaaagatattcatagtagttacctattttatttcnnnnnnnnn-cttcaaattcttatgagaaaaataa |
199 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
28102455 |
tgagaaggttacttgtactgcataaaaaaataaaagatattcatagtagttacctattttatttcttttttttttcttcaaattcttatgagataa---- |
28102550 |
T |
|
| Q |
200 |
agtttgatcaatcttattgtctcactaaaaattcaatcaaacttttatcctctcaaacaattcattattaattgacgattattaatcacttgagttcaac |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28102551 |
-gtttgatcaatcttattgtctcactaaaaattcaatcaaacttttatcctctcaaacaattcattattaatcgacgattattaatcacttgagttcaac |
28102649 |
T |
|
| Q |
300 |
aatctgattatttaattaagtatatagctatataagcacatgatgtaacatgtttcaactaaaccctcatttcaaatctgtaatgtgtttgccacttcag |
399 |
Q |
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|
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28102650 |
aatctgattatttaactaagtatatagctatataagcacatgaggtaacatgtttcaactaaaccctcatttcaaatgtgtaatgtgtttgccacttcag |
28102749 |
T |
|
| Q |
400 |
ttagccacaaaaacaaagtaaaacattccttggatgtatcttctatt--aaacacttcaattccttccccaaaccatttttgataaaggtgtttatttga |
497 |
Q |
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| T |
28102750 |
ctagccacaaaaacaaagtaaaacattccttggatgtatcttctattaaaaacacttcaattccttccccaaaccatttttgataaaggtgtttattttg |
28102849 |
T |
|
| Q |
498 |
tcaatttagttagcgaaatgctaataaatgttttaaaaacacttgttaagaaacttaaaaaagaaagtttatcttattaatgatgcattcaacacc |
593 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28102850 |
tcaatttagttagcgaaatgctaataaatgttctaaaaacacttgttaagaaacttaaaaaagaaaatttatcttattaatgatgcattcaacacc |
28102945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 661 - 770
Target Start/End: Original strand, 28103013 - 28103121
Alignment:
| Q |
661 |
ctagtgtcataagaacacttcttagtgtaactcattaagttaatacattgatttctacatctatgactgcgccacatcaccaataaaaaatatgtcatct |
760 |
Q |
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|||||||||| | |||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28103013 |
ctagtgtcatgacaacacttcttggtgcaactcattaagttaatagattgatttctacatctatgactgcgccacatcaccaat-aaaaatatgtcatct |
28103111 |
T |
|
| Q |
761 |
cttcttcccc |
770 |
Q |
| |
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|||||||||| |
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| T |
28103112 |
cttcttcccc |
28103121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 593
Target Start/End: Original strand, 9596294 - 9596350
Alignment:
| Q |
537 |
cacttgttaagaaacttaaaaaagaaagtttatcttattaatgatgcattcaacacc |
593 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| |
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| T |
9596294 |
cacttgttaagaagcttaaaaaagaaagtttatcttagagatgatgtattcaacacc |
9596350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 521 - 562
Target Start/End: Complemental strand, 29110866 - 29110825
Alignment:
| Q |
521 |
ataaatgttttaaaaacacttgttaagaaacttaaaaaagaa |
562 |
Q |
| |
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||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
29110866 |
ataaatgctttaaaaacacttgttaagaaatttaaaaaagaa |
29110825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 537 - 593
Target Start/End: Original strand, 24093783 - 24093839
Alignment:
| Q |
537 |
cacttgttaagaaacttaaaaaagaaagtttatcttattaatgatgcattcaacacc |
593 |
Q |
| |
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||||||||||||| ||||||| |||||||||||||| ||||||| |||||||||| |
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| T |
24093783 |
cacttgttaagaagcttaaaagagaaagtttatcttgggaatgatgtattcaacacc |
24093839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 540 - 573
Target Start/End: Complemental strand, 6963715 - 6963682
Alignment:
| Q |
540 |
ttgttaagaaacttaaaaaagaaagtttatctta |
573 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |
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| T |
6963715 |
ttgttaagaaacttaaaagagaaagtttatctta |
6963682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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