View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2727_low_5 (Length: 682)
Name: NF2727_low_5
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 208 - 663
Target Start/End: Complemental strand, 17110266 - 17109800
Alignment:
| Q |
208 |
tcattttaaagtgggtccagttcaagtaaatactatttgaatataaatctgcaccacttgatatgagatataccaaaagaaaacatgtaaatagtaggta |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17110266 |
tcattttaaagtgggtccagttcaagtaaatactatttgaatataaatctgcaccacttgatatgagatataccaaaagaaaacatgtaaatagtaggta |
17110167 |
T |
|
| Q |
308 |
cctgagtaattgttgggcactatgactgttggtccctctcaggatcgtcaatcattatacattgaatatgcgcaatcct-----------ttccataagg |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17110166 |
cctgagtaattgttgggcactatgactgttggtccctctcaggatcgtcaatcattatacattgaatatgcgcaatcctctcgcaatcctttccataagg |
17110067 |
T |
|
| Q |
397 |
tttcttgcatctttctaaaaggaatggacagttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttggga |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17110066 |
tttcttgcatctttctaaaaggaatggacagttccccgaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttggga |
17109967 |
T |
|
| Q |
497 |
cagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggtaa |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17109966 |
cagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggtaa |
17109867 |
T |
|
| Q |
597 |
gagagagtggaatcaacccttgattgggaaaagactccacatctgtttcttggatatacatgtaaca |
663 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17109866 |
gagagagtggaatcaacccttgattgggaaaagactccacatctgtttcttggatatacatgtaaca |
17109800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 17110496 - 17110288
Alignment:
| Q |
1 |
gtgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacacacgaagtttggtaactaattaagctcggccaattgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
17110496 |
gtgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacacacgacgtttggtaactaattaagctcggccaattgcg |
17110397 |
T |
|
| Q |
101 |
tgtacgtctccaactgtattgatttatattattacccacttgggatttacagggtacaaatttgtatttaaacactgcatttcagattacaacataaatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17110396 |
tgtacgtctccaactgtattgatttatattattacccacttaggatttacagggtacaaatttgtatttaaacactgcatttcagattacaacataaatc |
17110297 |
T |
|
| Q |
201 |
ccactgatc |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
17110296 |
ccactgatc |
17110288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 395 - 658
Target Start/End: Complemental strand, 17030608 - 17030345
Alignment:
| Q |
395 |
ggtttcttgcatctttctaaaaggaatggacagttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgg |
494 |
Q |
| |
|
||||||||||||| || | ||| | || ||| |||||||| || |||| |||||| |||||| |||| ||||||||||| || || | || ||||||| |
|
|
| T |
17030608 |
ggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggaagaccctcctttggcaagcattggatgttgg |
17030509 |
T |
|
| Q |
495 |
gacagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggt |
594 |
Q |
| |
|
|||| || || ||| | |||| | ||||||||| |||| || |||||||||||||||||||||||||||||| |||||||| |||||||||| || |
|
|
| T |
17030508 |
gacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacggatatttagataagt |
17030409 |
T |
|
| Q |
595 |
aagagagagtggaatcaacccttgattgggaaaagactccacatctgtttcttggatatacatg |
658 |
Q |
| |
|
||||||||| |||| |||||||||||| ||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
17030408 |
aagagagaggggaagcaacccttgattaggaaaagactccacatctgcttcttgaatatacatg |
17030345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 395 - 658
Target Start/End: Complemental strand, 17048946 - 17048683
Alignment:
| Q |
395 |
ggtttcttgcatctttctaaaaggaatggacagttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgg |
494 |
Q |
| |
|
||||||||||||| || | ||| | || ||| |||||||| || |||| |||||| |||||| |||| ||||||||||| || || | || ||||||| |
|
|
| T |
17048946 |
ggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggaagaccctcctttggcaagcattggatgttgg |
17048847 |
T |
|
| Q |
495 |
gacagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggt |
594 |
Q |
| |
|
|||| || || ||| | |||| | ||||||||| |||| || |||||||||||||||||||||||||||||| |||||||| |||||||||| || |
|
|
| T |
17048846 |
gacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacggatatttagataagt |
17048747 |
T |
|
| Q |
595 |
aagagagagtggaatcaacccttgattgggaaaagactccacatctgtttcttggatatacatg |
658 |
Q |
| |
|
||||||||| |||| |||||||||||| ||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
17048746 |
aagagagaggggaagcaacccttgattaggaaaagactccacatctgcttcttgaatatacatg |
17048683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 395 - 659
Target Start/End: Complemental strand, 16978736 - 16978472
Alignment:
| Q |
395 |
ggtttcttgcatctttctaaaaggaatggacagttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgg |
494 |
Q |
| |
|
||||||||||||| || | ||| | || ||| |||||||| || |||| |||||| |||||| |||| ||||||||||| || || | || ||||||| |
|
|
| T |
16978736 |
ggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggcagaccctcctttggcaagcattggatgttgg |
16978637 |
T |
|
| Q |
495 |
gacagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggt |
594 |
Q |
| |
|
|||| || || ||| | |||| | ||||||||| |||| || |||||||||||||||||||||||||||||| |||||||| ||||||||| || |
|
|
| T |
16978636 |
gacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacaaatatttagataagt |
16978537 |
T |
|
| Q |
595 |
aagagagagtggaatcaacccttgattgggaaaagactccacatctgtttcttggatatacatgt |
659 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||| ||||||||||| |||||| |||||||||| |
|
|
| T |
16978536 |
aagagagataggaagcaacccttgattaggaaaaaactccacatctaattcttgaatatacatgt |
16978472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 593 - 639
Target Start/End: Complemental strand, 14314008 - 14313962
Alignment:
| Q |
593 |
gtaagagagagtggaatcaacccttgattgggaaaagactccacatc |
639 |
Q |
| |
|
||||||||| |||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
14314008 |
gtaagagagcgtggaagcaacccttgatcgggaaaagactccacatc |
14313962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 35052265 - 35052192
Alignment:
| Q |
2 |
tgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacacacgaagtttggtaa |
77 |
Q |
| |
|
|||||||||||||| || || ||||||| |||||||| |||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
35052265 |
tgttagaacagcaa-tccggttcaaaagaataaagatacgaaaaa-cgcaaacaatgaacacacgttgtttggtaa |
35052192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University