View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2727_low_6 (Length: 652)

Name: NF2727_low_6
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2727_low_6
NF2727_low_6
[»] chr6 (4 HSPs)
chr6 (44-223)||(1827461-1827638)
chr6 (14-171)||(1832236-1832390)
chr6 (14-78)||(1828328-1828392)
chr6 (122-171)||(1836132-1836181)
[»] chr2 (2 HSPs)
chr2 (222-384)||(10983066-10983228)
chr2 (222-269)||(3081203-3081251)
[»] chr3 (1 HSPs)
chr3 (220-289)||(33365923-33365993)
[»] chr1 (4 HSPs)
chr1 (221-289)||(49195465-49195534)
chr1 (220-269)||(40908314-40908364)
chr1 (221-289)||(12606643-12606712)
chr1 (222-269)||(46566569-46566617)
[»] chr4 (2 HSPs)
chr4 (222-289)||(31525509-31525577)
chr4 (222-269)||(23538245-23538293)
[»] chr5 (2 HSPs)
chr5 (222-297)||(12870155-12870232)
chr5 (222-269)||(43469632-43469680)
[»] chr7 (4 HSPs)
chr7 (491-536)||(45031858-45031903)
chr7 (222-269)||(10646135-10646183)
chr7 (119-171)||(46382938-46382990)
chr7 (226-269)||(4658704-4658748)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 9e-81; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 44 - 223
Target Start/End: Original strand, 1827461 - 1827638
Alignment:
Q  44 ttactatggtatatgaagatgctgaactcgcagccttgaaaggaggaaatatgcatgagaaagtgtttactaaaagtaattagtattctttggtcctaca 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1827461 ttactatggtatatgaagatgctgaactcgcagccttgaaaggaggaaatatgcatgagaaagggtttactaaaagtaattagtattctttggtcctaca 1827560  T
Q  144 aaagagacagtgttctatggtttggtccggccttctgtaacatgttttgtttcgaacgtgttttgcaattccaaaaatat 223  Q
    ||||||  |||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||    
T  1827561 aaagag--agtgttctatggtttggtccggccttgtgtaacatgttttgttctgaacgtgttttgcaattccaaaaatat 1827638  T

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Target: chr6; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 1832236 - 1832390
Alignment:
Q  14 catattattctgcagccttgattactatggttactatggtatatgaagatgctgaactcgcagccttgaaaggaggaaatatgcatgagaaagtgtttac 113  Q
    ||||||||||||||||||||| |  |||||||||||||||||||||||| ||||||||  ||||||||||||||| ||||||| ||||||||||||||||    
T  1832236 catattattctgcagccttgactggtatggttactatggtatatgaagaagctgaact--cagccttgaaaggagaaaatatgtatgagaaagtgtttac 1832333  T
Q  114 taaaagtaattagtattctttggtcctacaaaagagacagtgttctatggtttggtcc 171  Q
    ||||||| || ||| |||||||||| |||||||||||||||| |||||||||||||||    
T  1832334 taaaagt-atcagtgttctttggtcttacaaaagagacagtggtctatggtttggtcc 1832390  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 1828328 - 1828392
Alignment:
Q  14 catattattctgcagccttgattactatggttactatggtatatgaagatgctgaactcgcagcc 78  Q
    |||| ||||| ||||||||||||  ||||||||||||||||||||||||||| ||| ||||||||    
T  1828328 catactattccgcagccttgattggtatggttactatggtatatgaagatgcggaattcgcagcc 1828392  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 1836132 - 1836181
Alignment:
Q  122 attagtattctttggtcctacaaaagagacagtgttctatggtttggtcc 171  Q
    |||||||| ||||||||  ||||||||||||||| |||||||||||||||    
T  1836132 attagtatactttggtctaacaaaagagacagtggtctatggtttggtcc 1836181  T

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Target: chr2 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 222 - 384
Target Start/End: Complemental strand, 10983228 - 10983066
Alignment:
Q  222 atcctttattataaaagccagacttgatgagctggcagtttgccctaaacaatcctgtttttccctcctaatccgtcatttattgcaaggcttatctact 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| |||||||||||||||| |     
T  10983228 atcctttattataaaagccagacttgatgagctggcagtttgccctaatcaatcctgattttccctcctaattcgtcattaattgcaaggcttatctgcc 10983129  T
Q  322 aaccacccactacatattagcctcattaaatgtgacctttcatgtacatcaaacaaccaatca 384  Q
    ||||||||||| | | || | | |||| | |||||||||||||||||||||  ||||||||||    
T  10983128 aaccacccacttcctcttgggcgcatttattgtgacctttcatgtacatcattcaaccaatca 10983066  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 3081203 - 3081251
Alignment:
Q  222 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaa 269  Q
    |||||||| ||| |||||||||||||||||||||||||| |||||||||    
T  3081203 atcctttactattaaagccagacttgatgagctggcagtgttgccctaa 3081251  T

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Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 33365923 - 33365993
Alignment:
Q  220 atatcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgtttttccctcc 289  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||    
T  33365923 atatcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctcc 33365993  T

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Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 49195534 - 49195465
Alignment:
Q  221 tatcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgtttttccctcc 289  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||    
T  49195534 tatcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctcc 49195465  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 40908314 - 40908364
Alignment:
Q  220 atatcctttattataaaagccagacttgatgagctggcagt-ttgccctaa 269  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  40908314 atatcctttactataaaagccagacttgatgagctggcagtgttgccctaa 40908364  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 12606712 - 12606643
Alignment:
Q  221 tatcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgtttttccctcc 289  Q
    ||||||||| |||||||||||||||||||| ||||||||| ||||||||| || ||||  ||||||||||    
T  12606712 tatcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccttattttccctcc 12606643  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 46566569 - 46566617
Alignment:
Q  222 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaa 269  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  46566569 atcctttattataaaagccagatttgatgagctggcagtgttgccctaa 46566617  T

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Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 31525577 - 31525509
Alignment:
Q  222 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgtttttccctcc 289  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||    
T  31525577 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctcc 31525509  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 23538293 - 23538245
Alignment:
Q  222 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaa 269  Q
    |||||||||||| |||| ||||||||||||||| ||||| |||||||||    
T  23538293 atcctttattattaaagtcagacttgatgagctagcagtgttgccctaa 23538245  T

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Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 12870155 - 12870232
Alignment:
Q  222 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaaacaatcctgtttttccct-cctaatccgt 297  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||| || | |||||||||||| ||||||||||    
T  12870155 atcctttactataaaagccagacttgatgagctggcagtgttgccctaatcacttctgtttttccctccctaatccgt 12870232  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 43469680 - 43469632
Alignment:
Q  222 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaa 269  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43469680 atcctttattataaaagccagacttgatgagctggcagtgttgccctaa 43469632  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 491 - 536
Target Start/End: Complemental strand, 45031903 - 45031858
Alignment:
Q  491 taagatacagaattagagaggtgtgaatcttaccatcagtaaaata 536  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||    
T  45031903 taagatacaggattagagaggtgtaaatcttaccatcagtaaaata 45031858  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 10646183 - 10646135
Alignment:
Q  222 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaa 269  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  10646183 atcctttattctaaaagccagacttgatgagctggcagtgttgccctaa 10646135  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 46382990 - 46382938
Alignment:
Q  119 gtaattagtattctttggtcctacaaaagagacagtgttctatggtttggtcc 171  Q
    |||||| |||| ||||||||  ||||||||||||||| |||||||||||||||    
T  46382990 gtaattggtatactttggtctaacaaaagagacagtggtctatggtttggtcc 46382938  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 4658748 - 4658704
Alignment:
Q  226 tttattataaaagccagacttgatgagctggca-gtttgccctaa 269  Q
    |||||||||||||| |||||||||||||| ||| |||||||||||    
T  4658748 tttattataaaagctagacttgatgagctagcatgtttgccctaa 4658704  T

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