View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2727_low_9 (Length: 524)
Name: NF2727_low_9
Description: NF2727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2727_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 48159479 - 48159229
Alignment:
| Q |
18 |
taagtaagtaagttttattcattctttgtatttctcatagtgaaaaatgtc-aaatttccattttgacagatattagaaaatggggtgaataggatgctt |
116 |
Q |
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| T |
48159479 |
taagtaagtaagttttattcattctttgtatttctcatagtgaaaaatgtctaaatttccattttcacagatattagaaaatggggtgaataggatgctt |
48159380 |
T |
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| Q |
117 |
gttgttcttgaagattggagaaattcacgcataatccaattagttgccatactggtttctattttaatgattgttccatcagctgatgctgttgatgcac |
216 |
Q |
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| T |
48159379 |
gttgttcttgaagattggagaaattcacgcataatccaattagttgccatactggtttctattttaatgattgttccatcagctgatgctgttgatgcac |
48159280 |
T |
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| Q |
217 |
tcaaaacttgtgcttgtttgctcaaggaatgcaggtatgctactataccac |
267 |
Q |
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| T |
48159279 |
tcaaaacttgtgcttgtttgctcaaggaatgcaggtatgctgctataccac |
48159229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 278 - 521
Target Start/End: Complemental strand, 48159204 - 48158961
Alignment:
| Q |
278 |
ttgccaaatgttagtagcagagattcaactctaaaccacctacatataactctttaggtgtccccgcctatgccgccattgagctactcctccgatacag |
377 |
Q |
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| T |
48159204 |
ttgccaaatgttagtagcagatattcaactctaaaccacctacatataactctttaggtgtccctgcctatgccgccattgagctactcctccgatacag |
48159105 |
T |
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| Q |
378 |
atataagtgtttgtttggttccacttgtagaattatggaggtttgtaattgattctcagatgtttggttgctttccaatagaattgattcgatttgaagt |
477 |
Q |
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| T |
48159104 |
atataagtgtttgtttggttccacttgtagaattatggaggtttgtaattgattctcagatgtttggttgctttccagtagaattgattcgatttgaagt |
48159005 |
T |
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| Q |
478 |
tacatggatgcacacaaacataatcattttaccttcatctcact |
521 |
Q |
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| T |
48159004 |
tacatgaatgcacacaaacataatcattttaccttcaactcact |
48158961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 476
Target Start/End: Original strand, 17111820 - 17111872
Alignment:
| Q |
424 |
aattgattctcagatgtttggttgctttccaatagaattgattcgatttgaag |
476 |
Q |
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| T |
17111820 |
aattgattctgacatgtttggttgctttcgagtagaattgattctacttgaag |
17111872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 476
Target Start/End: Complemental strand, 15677938 - 15677886
Alignment:
| Q |
424 |
aattgattctcagatgtttggttgctttccaatagaattgattcgatttgaag |
476 |
Q |
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| T |
15677938 |
aattgattctgacatgtttggttgctttcaaatagaattgattctacttgaag |
15677886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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