View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2728-Insertion-1 (Length: 614)

Name: NF2728-Insertion-1
Description: NF2728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2728-Insertion-1
NF2728-Insertion-1
[»] chr2 (2 HSPs)
chr2 (8-570)||(33815400-33815962)
chr2 (495-530)||(32271385-32271420)
[»] chr8 (2 HSPs)
chr8 (495-530)||(21634847-21634882)
chr8 (498-530)||(5515537-5515569)
[»] chr7 (8 HSPs)
chr7 (495-530)||(32089306-32089341)
chr7 (495-530)||(32093063-32093098)
chr7 (495-530)||(32096779-32096814)
chr7 (495-530)||(39128533-39128568)
chr7 (495-530)||(39478477-39478512)
chr7 (495-530)||(41706670-41706705)
chr7 (495-530)||(41812181-41812216)
chr7 (240-293)||(24177714-24177767)
[»] chr6 (2 HSPs)
chr6 (495-530)||(26217275-26217310)
chr6 (496-530)||(11187926-11187960)
[»] chr5 (1 HSPs)
chr5 (228-295)||(38683975-38684042)
[»] chr3 (3 HSPs)
chr3 (495-530)||(38044562-38044597)
chr3 (495-530)||(48838007-48838042)
chr3 (495-530)||(50152374-50152409)
[»] chr1 (2 HSPs)
chr1 (495-530)||(31141989-31142024)
chr1 (228-291)||(51234326-51234389)
[»] chr4 (2 HSPs)
chr4 (495-529)||(7772341-7772375)
chr4 (495-529)||(7777949-7777983)


Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 8 - 570
Target Start/End: Complemental strand, 33815962 - 33815400
Alignment:
Q  8 atagtttcaaccacaatagaatattcttaattcaaccacaatagcatagtttcatcgcaatcaaacaccataaaacacaaagctgctgccatgctttatt 107  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33815962 atagtttcaaccacaatagcatattcttaattcaaccacaatagcatagtttcatcgcaatcaaacaccataaaacacaaagctgctgccatgcattatt 33815863  T
Q  108 acatcaaaacactatagattcaaaatgcaacaatgaataacatgcattcaagatcctaagcacaccttaggataggtttaagtggggaaactataggtta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815862 acatcaaaacactatagattcaaaatgcaacaatgaataacatgcattcaagatcctaagcacaccttaggataggtttaagtggggaaactataggtta 33815763  T
Q  208 cctcttagaagcacaccttttccatttgaatca---cccaacttaaatttgatgatttgcatctacttccatttctccgtcgttttgtaagtgnnnnnnn 304  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  33815762 cctcttagaagcacaccttttccatttgaatcaccccccaacttaaatttgatgatttgcatctacttccatttctccgtcgttttgtaagtgtttttta 33815663  T
Q  305 nagggaaggtgttaaatgagtgttgaaaagttagagtcgttcaaataatataagagctcaaatgaataatttggtaagttgcggtgcatgttgtttctta 404  Q
     ||||||||||||||||||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815662 tagggaaggtgttaaatgagtgttgaaaagttagagtcgtcca---aatataagagctcaaatgaataatttggtaagttgcggtgcatgttgtttctta 33815566  T
Q  405 gttgtcgcagaagttccacattgcttaatctttccacatatttagtgtgtgtataatgtgcacactccacaaacaaatgtttctttgaggtaaaattgga 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815565 gttgtcgcagaagttccacattgcttaatctttccacatatttagtgtgtatataatgtgcacactccacaaacaaatgtttctttgaggtaaaattgga 33815466  T
Q  505 acgatacaaagaagattagcatggcctcctcatcgaggatgacacgcacatattaagatacggtcc 570  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815465 acgatacgaagaagattagcatggcctcctcatcgaggatgacacgcacatattaagatacggtcc 33815400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 530
Target Start/End: Complemental strand, 32271420 - 32271385
Alignment:
Q  495 taaaattggaacgatacaaagaagattagcatggcc 530  Q
    |||||||||||||||||||||||||||| |||||||    
T  32271420 taaaattggaacgatacaaagaagattatcatggcc 32271385  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 530
Target Start/End: Complemental strand, 21634882 - 21634847
Alignment:
Q  495 taaaattggaacgatacaaagaagattagcatggcc 530  Q
    |||||||||||||||||| |||||||||||||||||    
T  21634882 taaaattggaacgatacagagaagattagcatggcc 21634847  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 530
Target Start/End: Original strand, 5515537 - 5515569
Alignment:
Q  498 aattggaacgatacaaagaagattagcatggcc 530  Q
    ||||||||||||||| |||||||||||||||||    
T  5515537 aattggaacgatacagagaagattagcatggcc 5515569  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 530
Target Start/End: Complemental strand, 32089341 - 32089306
Alignment:
Q  495 taaaattggaacgatacaaagaagattagcatggcc 530  Q
    |||||||||||||||||| |||||||||||||||||    
T  32089341 taaaattggaacgatacagagaagattagcatggcc 32089306  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 530
Target Start/End: Complemental strand, 32093098 - 32093063
Alignment:
Q  495 taaaattggaacgatacaaagaagattagcatggcc 530  Q
    |||||||||||||||||| |||||||||||||||||    
T  32093098 taaaattggaacgatacagagaagattagcatggcc 32093063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 530
Target Start/End: Complemental strand, 32096814 - 32096779
Alignment:
Q  495 taaaattggaacgatacaaagaagattagcatggcc 530  Q
    |||||||||||||||||| |||||||||||||||||    
T  32096814 taaaattggaacgatacagagaagattagcatggcc 32096779  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 530
Target Start/End: Complemental strand, 39128568 - 39128533
Alignment:
Q  495 taaaattggaacgatacaaagaagattagcatggcc 530  Q
    |||||||||||||||||| |||||||||||||||||    
T  39128568 taaaattggaacgatacagagaagattagcatggcc 39128533  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 530
Target Start/End: Original strand, 39478477 - 39478512
Alignment:
Q  495 taaaattggaacgatacaaagaagattagcatggcc 530  Q
    |||||||||||||||||| |||||||||||||||||    
T  39478477 taaaattggaacgatacagagaagattagcatggcc 39478512  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 530
Target Start/End: Complemental strand, 41706705 - 41706670
Alignment:
Q  495 taaaattggaacgatacaaagaagattagcatggcc 530  Q
    |||||||||||||||||| |||||||||||||||||    
T  41706705 taaaattggaacgatacagagaagattagcatggcc 41706670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 530
Target Start/End: Original strand, 41812181 - 41812216
Alignment:
Q  495 taaaattggaacgatacaaagaagattagcatggcc 530  Q
    |||||||||||||||||| |||||||||||||||||    
T  41812181 taaaattggaacgatacagagaagattagcatggcc 41812216  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 24177714 - 24177767
Alignment:
Q  240 acccaacttaaatttgatgatttgcatctacttccatttctccgtcgttttgta 293  Q
    ||||||||| ||| ||||||||| ||||| |||| ||||||||||| |||||||    
T  24177714 acccaacttgaatatgatgatttacatctgcttctatttctccgtcattttgta 24177767  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 530
Target Start/End: Complemental strand, 26217310 - 26217275
Alignment:
Q  495 taaaattggaacgatacaaagaagattagcatggcc 530  Q
    |||||||||||||||||| |||||||||||||||||    
T  26217310 taaaattggaacgatacagagaagattagcatggcc 26217275  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 530
Target Start/End: Original strand, 11187926 - 11187960
Alignment:
Q  496 aaaattggaacgatacaaagaagattagcatggcc 530  Q
    ||||||||||||||||| |||||||||||||||||    
T  11187926 aaaattggaacgatacagagaagattagcatggcc 11187960  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 38684042 - 38683975
Alignment:
Q  228 tccatttgaatcacccaacttaaatttgatgatttgcatctacttccatttctccgtcgttttgtaag 295  Q
    ||||||| || |||||||||| | ||||||| ||| ||||| |||  |||||||||||||||||||||    
T  38684042 tccatttcaagcacccaacttgattttgatggttttcatctcctttaatttctccgtcgttttgtaag 38683975  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 530
Target Start/End: Complemental strand, 38044597 - 38044562
Alignment:
Q  495 taaaattggaacgatacaaagaagattagcatggcc 530  Q
    |||||||||||||||||| |||||||||||||||||    
T  38044597 taaaattggaacgatacagagaagattagcatggcc 38044562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 530
Target Start/End: Original strand, 48838007 - 48838042
Alignment:
Q  495 taaaattggaacgatacaaagaagattagcatggcc 530  Q
    |||||||||||||||||| |||||||||||||||||    
T  48838007 taaaattggaacgatacagagaagattagcatggcc 48838042  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 530
Target Start/End: Original strand, 50152374 - 50152409
Alignment:
Q  495 taaaattggaacgatacaaagaagattagcatggcc 530  Q
    |||||||||||||||||| |||||||||||||||||    
T  50152374 taaaattggaacgatacagagaagattagcatggcc 50152409  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 530
Target Start/End: Complemental strand, 31142024 - 31141989
Alignment:
Q  495 taaaattggaacgatacaaagaagattagcatggcc 530  Q
    |||||||||||||||||| |||||||||||||||||    
T  31142024 taaaattggaacgatacagagaagattagcatggcc 31141989  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 51234389 - 51234326
Alignment:
Q  228 tccatttgaatcacccaacttaaatttgatgatttgcatctacttccatttctccgtcgttttg 291  Q
    ||||||| || |||||||||| ||||||||||||| ||||| |||| |||||||| || |||||    
T  51234389 tccatttcaaccacccaacttgaatttgatgatttacatctgcttcaatttctccatcattttg 51234326  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 495 - 529
Target Start/End: Complemental strand, 7772375 - 7772341
Alignment:
Q  495 taaaattggaacgatacaaagaagattagcatggc 529  Q
    |||||||||||||||||| ||||||||||||||||    
T  7772375 taaaattggaacgatacagagaagattagcatggc 7772341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 495 - 529
Target Start/End: Complemental strand, 7777983 - 7777949
Alignment:
Q  495 taaaattggaacgatacaaagaagattagcatggc 529  Q
    |||||||||||||||||| ||||||||||||||||    
T  7777983 taaaattggaacgatacagagaagattagcatggc 7777949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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