View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2728-Insertion-2 (Length: 441)
Name: NF2728-Insertion-2
Description: NF2728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2728-Insertion-2 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 7 - 441
Target Start/End: Original strand, 29059598 - 29060040
Alignment:
| Q |
7 |
agtacatgtatcctgtacctgctgagacactaggtgcaatctagcctataaatcattatgttcatactttgtttgtcatggaatgaattggaatg----- |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29059598 |
agtacatgtatcctgtacctgctgagacactaggtgcaatctagcctataaatcattatgttcatactttgtttgtcatggaatgaattggaatgtaatg |
29059697 |
T |
|
| Q |
102 |
taatgttgagtatgtgtttcaatgaaactccccataaaaacaaggtttgtgtctgtcaacatcttctttgagttgcaaattcttaacttatacattgaca |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
29059698 |
taatgttgagtatgtgtttcaatgaaactccccataaaaacaaggtttgtgtctgtcaacatcttctttgagttgcgaattcttaacttgtacattgaca |
29059797 |
T |
|
| Q |
202 |
catcagaatcaaatggaacaggacaattgagaattatgaaagcattcagcttacacatggttttgggccatcttttagattcacttggtagcacta---a |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29059798 |
catcagaatcaaatggaacaggacaattgagaattatgaaagcattcatcttacacatggttttgggccatcttttagattcacttggtagcactaatta |
29059897 |
T |
|
| Q |
299 |
tcgatgcatattttaaaatgcatcttgtttaaactgcatggaaaataatcgatgattatgattgaaatttgtcaagcttaataatctctatactttccgt |
398 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29059898 |
tctatgcatattttaaaatgcatcttgtttaaactgcatgaaaaataatcgatgattatgattgaaatttgtcaagcttaataatctctatactttccgt |
29059997 |
T |
|
| Q |
399 |
tatttaaactgtttcattgtttggaattaatcacacttatgca |
441 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29059998 |
tatttaaactgtttcattgtttagaattaatcacacttatgca |
29060040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 437
Target Start/End: Original strand, 29061706 - 29061745
Alignment:
| Q |
398 |
ttatttaaactgtttcattgtttggaattaatcacactta |
437 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
29061706 |
ttatttaaactgttccattgtttggaattattcacactta |
29061745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University