View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2728R-Insertion-1 (Length: 942)
Name: NF2728R-Insertion-1
Description: NF2728R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2728R-Insertion-1 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr3 (8 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 781; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 781; E-Value: 0
Query Start/End: Original strand, 9 - 942
Target Start/End: Original strand, 33647385 - 33648331
Alignment:
| Q |
9 |
ctttatatggaagcaagggtgtgttgtcttatattctcggaaccggtcgtgttgatgttaaccgagtgtatggctcagatagggctaccgctcttcattg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
33647385 |
ctttatatggaagcaagggtgtgttgtcttatattctcggaaccggtcgtgttgatgttaaccgagtgtgtggctcagatagggctaccgctcttcgttg |
33647484 |
T |
|
| Q |
109 |
tgctgtttctggttgttctgctgcttctgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgcaaacggtaaccggtgc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
33647485 |
tgctgtttctggttgttctgctgcttctgccgaggttgtcaaacttctgcttgatgcatctgcagatgttagttccgctgatgcatatcgtaaccggtgc |
33647584 |
T |
|
| Q |
209 |
agcgacttggttgtctcggtttctaatagtctctacggttcaaggaagaggatactacaaggcatactagaaggggtagatgatgttgatgacgaggacg |
308 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33647585 |
agcaacttggttgtctcggtttctaatagtctctacggttcaaggaagaggatactacaagggatactagaaggggtagatgatgttgatgacgaggacg |
33647684 |
T |
|
| Q |
309 |
acgatttccttaaggaaataggtttccaaatggtggagaagcaacaagacgtaggtacacctcgcaccgagaagaaagatcatcccattgatccatccct |
408 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33647685 |
acaatttccttaaggaaataggtttccaaatggtggagaagcaacaagacgtaggtacacctcacaccgagaagaaagattatcccattgatccatccct |
33647784 |
T |
|
| Q |
409 |
acctgacataaaaaatggaatatatagtacagatgaatttaggatgtttacattcaaagtgaagccttgttcaagggcttattctcatgattggactgag |
508 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33647785 |
acctgacataaagaatggaatatatagtacagatgaatttaggatgtttacattcaaagtgaagccttgttcaagggcttattctcatgattggactgag |
33647884 |
T |
|
| Q |
509 |
tgcccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacatgtgtcccttgccccgagtttcggaagagatcatgca |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33647885 |
tgcccctttgttcatcctggggagaatgcaaggcgccgcgatctgaggaaatgtcattacacatgtgtcccttgccccgagtttcggaagggatcatgca |
33647984 |
T |
|
| Q |
609 |
acaaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaaggatgaaaccagatgcac |
708 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33647985 |
acaaaggggatgcttctgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaaggatgaaactagatgcac |
33648084 |
T |
|
| Q |
709 |
gaga--------------cgctcacaagccagtggagtttcgaccgttgtatgcttctaccggttctgctctaccttcacctacatcgtattcaaattca |
794 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33648085 |
gagaagggtttgctttttcgctcacaagccagaggagcttcgaccgttgtatgcttctaccggttctgctctaccttcacctacatcatattcaaattca |
33648184 |
T |
|
| Q |
795 |
ccaagtgcttcttcaatggattctttcacattgagctctccgtcttcttcgatacaatctgcgtcgacaccacctttgactccatctgcaacatcatcgc |
894 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
33648185 |
cctagtgcttcttcaatggattctttcacattgagctctctgtcttctttgatacaatctgcgtcgacgccacctttgactccatctgcagcatcatcgc |
33648284 |
T |
|
| Q |
895 |
ctacggctgggaaccatgtggcagactcagattcagcttcatgctgca |
942 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33648285 |
ctacggct-ggaaccatgtggcagactcagattcagcttcatgctgca |
33648331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 11 - 942
Target Start/End: Original strand, 25812206 - 25813129
Alignment:
| Q |
11 |
ttatatggaagcaagggtgtgttgtcttatattctcggaaccggtcgtgttgatgttaaccgagtgtatggctcagatagggctaccgctcttcattgtg |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
25812206 |
ttatttggaagcaagggtgtgttgtcttatattctcggaaccagtcgtgttgatgtcaaccgagtgtgcggctcagatagggctaccgctcttcgttgtg |
25812305 |
T |
|
| Q |
111 |
ctgtttctggttgttctgctgcttctgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgcaaacggtaaccggtgcag |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||| || ||| |||| |||| |||||||| ||||||||||||||||||| ||||| || | |||| | ||||| |
|
|
| T |
25812306 |
ctgtttctggatgttctgctgcttctgctgaagttatcaacctttcgcttgatgcatctgcagatgttagttccattgatgtgaatgataacag-tgcag |
25812404 |
T |
|
| Q |
211 |
cgacttggttgtctcggtttctaatagtctctacggttcaaggaagaggatactacaaggcatactagaaggggtagatgatgttgatgacgaggacgac |
310 |
Q |
| |
|
||||||| |||||||||| |||| |||| | | ||||||||||||||||||||||| | |||||||||||| ||||||||||||||| |
|
|
| T |
25812405 |
cgacttgattgtctcggtgtctagtagtatattcggttcaaggaagaggatactacgatccatactagaaggcgtagatgatgttgat------------ |
25812492 |
T |
|
| Q |
311 |
gatttccttaaggaaataggtttccaaatggtggagaagcaacaagacgtaggtacacctcgcaccgagaagaaagatcatcccattgatccatccctac |
410 |
Q |
| |
|
|||||||| ||| ||||||| ||| |||||||| |||| ||| | |||| ||||||||| || |||||||||||| |||| ||| |||||||||||| |
|
|
| T |
25812493 |
---ttccttaaagaagtaggttttcaattggtggagcagcagcaaaatgtagctacacctcgaactgagaagaaagattatccaattaatccatccctac |
25812589 |
T |
|
| Q |
411 |
ctgacataaaaaatggaatatatagtacagatgaatttaggatgtttacattcaaagtgaagccttgttcaagggcttattctcatgattggactgagtg |
510 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25812590 |
ctgacataaacaatgagatatatagtacagatgaatttaggatgtttacattcaaagtgaagccttgttcaaggg-ttattctcatgattggactgagtg |
25812688 |
T |
|
| Q |
511 |
cccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacatgtgtcccttgccccgagtttcggaagagatcatgcaac |
610 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
25812689 |
cccctttgttcatccagggga-aacgcaaggcgccgtgattcgaggaaatatcattacacatgtgtcccttgccccgagtttcggaagggatcatgtaga |
25812787 |
T |
|
| Q |
611 |
aaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaaggatgaaaccagatgcacga |
710 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| | |
|
|
| T |
25812788 |
aaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatccagctcaatatataacaaggctttgcaaggatgaaaccagatgcacca |
25812887 |
T |
|
| Q |
711 |
ga--------------cgctcacaagccagtggagtttcgaccgttgtatgcttctaccggttctgctctaccttcacctacatcgtattcaaattcacc |
796 |
Q |
| |
|
|| |||||||| |||| |||| |||||||||| |||||||||||||||| | || | |||||||||||||| |||||||||||||| |
|
|
| T |
25812888 |
gaagggtttgcttttttgctcacaaaccagaggagcttcgaccgttatatgcttctaccggttgtcctttgccttcacctacatcatattcaaattcacc |
25812987 |
T |
|
| Q |
797 |
aagtgcttcttcaatggattctttcacattgagctctccgtcttcttcgatacaatctgcgtcgacaccacctttgactccatctgcaacatcatcgcct |
896 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | || |||||||||| |||||| | ||||||||||| |
|
|
| T |
25812988 |
ttgtgcttcttcaatggattctttcacattgagttctccgtcttcttcgatacaatctgcaccaacgccacctttgattccatcgg---catcatcgcct |
25813084 |
T |
|
| Q |
897 |
acggctgggaaccatgtggcagactcagattcagcttcatgctgca |
942 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25813085 |
gctact-ggaaccatgtggcagactcagattcagcttcatgctgca |
25813129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 315 - 942
Target Start/End: Original strand, 25818160 - 25818800
Alignment:
| Q |
315 |
tccttaaggaaataggtttccaaatggtggagaagcaacaagacgtaggtacacctcgcaccgagaagaaagatcatcccattgatccatccctacctga |
414 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| |||||||||| ||| |||||||||| || |||||||||||| |||| |||||||||||| |||||| |
|
|
| T |
25818160 |
tccttaaggaagcaggtttccaaatg-tggagcagcaacaagatgtatgtacacctcgaactgagaagaaagattatccaattgatccatccatacctgg |
25818258 |
T |
|
| Q |
415 |
cataaaaaatggaatatatagtacagatgaatttaggatgtttacattcaaagtgaagccttgttcaagggcttattctcatgattggactgagtgcccc |
514 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||||||| |||||||||| ||||||||||||| |||||| | |
|
|
| T |
25818259 |
cataaaaaatgagatatatagcacagatgaatttaggatgtttgcattcaaagggaagccttgtttaagggcttatcctcatgattggaccaagtgccac |
25818358 |
T |
|
| Q |
515 |
tttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacatgtgtccc-ttgccccgagtttcggaagagatcatgcaacaaa |
613 |
Q |
| |
|
||||| || || ||||| || |||||||||||||||| |||||||||||||||||| |||||||| ||| || ||||||||||| | ||||||| |||| |
|
|
| T |
25818359 |
tttgtccaccccggggaaaacgcaaggcgccgtgatctgaggaaatatcattacacctgtgtccctttgtcctgagtttcggaaagggtcatgcagcaaa |
25818458 |
T |
|
| Q |
614 |
ggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaaggatgaaaccagatgcacgaga- |
712 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||| |||||| |||||||||| |||||||||||||||| | ||||| ||| |
|
|
| T |
25818459 |
ggggatgcttgtgaatatgcacatggtatttgcgagtgctggcttcatcctggtcaatatagaacaaggcattgcaaggatgaaacctgctgcaccagaa |
25818558 |
T |
|
| Q |
713 |
-------------cgctcacaagccagtggagtttcgaccgttgtatgcttctaccggttctgctctaccttcacctacatcgtattcaaattcaccaag |
799 |
Q |
| |
|
|||||||| || | |||| ||||||| |||||| || ||| ||||||||| | |||||||||||||| ||||| |||||||| || |
|
|
| T |
25818559 |
gcgtttgcatttttgctcacaaacccgaggagcttcgaccactgtatgattttacgggttctgcttttccttcacctacatcatattccaattcacctag |
25818658 |
T |
|
| Q |
800 |
tgcttcttcaatggattctttcacattgagctctccgtcttcttcgatacaatctgcgtcgacaccacctttgactccatctgcaacatcatcgcctacg |
899 |
Q |
| |
|
| |||||| || ||||||||||||||||||||||||||||||| |||||||||||| || | |||||| |||||||||| |||||| ||| || | | |
|
|
| T |
25818659 |
ttcttctttgatagattctttcacattgagctctccgtcttctttgatacaatctgcatcaaggccacctctgactccatcggcaacaacattgcttgtg |
25818758 |
T |
|
| Q |
900 |
gctgggaaccatgtggcagactcagattcagcttcatgctgca |
942 |
Q |
| |
|
||| |||||||||||| |||||| ||||||||||||| |||| |
|
|
| T |
25818759 |
gct-ggaaccatgtggaagactcgtattcagcttcatgttgca |
25818800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 379 - 860
Target Start/End: Original strand, 25821582 - 25822082
Alignment:
| Q |
379 |
gaagaaagatcatcccattgatccatccctacctgacataaaaaatggaatatatagtacagatgaatttaggatgtttacattcaaagtgaagccttgt |
478 |
Q |
| |
|
|||||||||| ||| || |||| |||||||||||||||||| |||| |||||| |||||||||||||||||||| || |||||||||||||| ||| |
|
|
| T |
25821582 |
gaagaaagattatcggatcgatcgatccctacctgacataaagaatgaggtatatattacagatgaatttaggatgtataaattcaaagtgaagctttgc |
25821681 |
T |
|
| Q |
479 |
tcaagggctta---ttctcatgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacatgtg |
575 |
Q |
| |
|
||| ||| | | | ||||||||||||| || || ||||||| |||| ||||||| | ||||||||||||||||||| ||||||| |||||| |||| |
|
|
| T |
25821682 |
tcatgggataatgctcctcatgattggacagaatgtccctttgctcattctggggaaatcgcaaggcgccgtgatccgaagaaatattattacagctgtg |
25821781 |
T |
|
| Q |
576 |
tcccttgccccgagtttcggaagagatcatgcaacaaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacag |
675 |
Q |
| |
|
||| ||| | || |||| ||| ||||||||| ||||||||| | ||| |||||||||||||| ||||||| | |||||| ||||||| || |||||| |
|
|
| T |
25821782 |
tccattgtcatgaatttcagaatggatcatgcagtaaaggggatacatgtcaatatgcacatggtgtttttgagtcctggctgcatcctggtcgatacag |
25821881 |
T |
|
| Q |
676 |
aacaaggctttgcaaggatgaaaccagatgcacgaga--------------cgctcacaagccagtggagtttcgaccgttgtatgct--tctaccggtt |
759 |
Q |
| |
|
||||| ||||||||| ||| ||| | |||||| ||| |||||||| || | |||| |||| | |||| | ||| | |||| ||| |
|
|
| T |
25821882 |
aacaacgctttgcaataatggaactaaatgcacaagagaaatttgcttctttgctcacaaacccgaggagcttcgcctgttgaaggcttatataccagtt |
25821981 |
T |
|
| Q |
760 |
ctgctctaccttcacctacatcgtattcaaattcaccaagtgcttcttcaatggattctttcacattgagctctccgtcttcttcgatacaatctgcgtc |
859 |
Q |
| |
|
||||| | |||||||||||||| ||||||||||||||||||| ||| |||||||||| ||||||||||| || |||||||||| |||||||||| |||| |
|
|
| T |
25821982 |
ctgctttgccttcacctacatcaaattcaaattcaccaagtgcctctgcaatggattccttcacattgagatcaccgtcttctttgatacaatcttcgtc |
25822081 |
T |
|
| Q |
860 |
g |
860 |
Q |
| |
|
| |
|
|
| T |
25822082 |
g |
25822082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 25817884 - 25818117
Alignment:
| Q |
16 |
tggaagcaagggtgtgttgtcttatattctcggaaccggtcgtgttgatgttaaccgagtgtatggctcagatagggctaccgctcttcattgtgctgtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||||| |||| | ||| ||||| |||| ||| |||||||||| | ||||| |
|
|
| T |
25817884 |
tggaagcaagggtgtgttgtcttatattcttggaaccggtcgtgtcaatgttagccgaccttgtggttcagacaggggtacagctcttcatttttctgtt |
25817983 |
T |
|
| Q |
116 |
tctggttgttctgctgcttctgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgcaaacggtaaccggtgcagcgact |
215 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||||||| |||||| |||||||||| |||| | ||||| || | ||| |||| | ||||| |
|
|
| T |
25817984 |
actggttgttctgctgcttctgccgagattattaagcttttggttgatgcttctgcagatggtagtgttgttgatgagaatgacaactggtgtaacgact |
25818083 |
T |
|
| Q |
216 |
tggttgtctcggtttctaatagtctctacggttc |
249 |
Q |
| |
|
|| |||||||||| ||||||||| ||| |||||| |
|
|
| T |
25818084 |
tgattgtctcggtgtctaatagtatctccggttc |
25818117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 437 - 696
Target Start/End: Original strand, 31810635 - 31810894
Alignment:
| Q |
437 |
acagatgaatttaggatgtttacattcaaagtgaagccttgttcaagggcttattctcatgattggactgagtgcccctttgttcatcctggggagaatg |
536 |
Q |
| |
|
|||||||||||||| |||| || |||||||| ||| |||||||||||| ||| ||||||||||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
31810635 |
acagatgaatttagaatgtatagtttcaaagtaaagacttgttcaaggggttacactcatgattggactgagtgtccatttgttcatccaggggagaatg |
31810734 |
T |
|
| Q |
537 |
caaggcgccgtgatccgaggaaatatcattacacatgtgtcccttgccccgagtttcggaagagatcatgcaacaaaggggatgcttgtgaatatgcaca |
636 |
Q |
| |
|
| ||| | | ||||| ||||| |||| ||| | ||||| || |||||||||||||| || || ||||| | || ||| | ||||| ||| |||| |
|
|
| T |
31810735 |
ctaggaggagagatccaaggaagtatccttatagctgtgttccgtgccccgagtttcgcaaaggaacatgccagaagaaagattcatgtgagtattcaca |
31810834 |
T |
|
| Q |
637 |
tggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaaggatga |
696 |
Q |
| |
|
|||||||||||| | | |||||||||| | |||||||||||||||||||| || ||||| |
|
|
| T |
31810835 |
tggtatttttgagtctttgcttcatccttcacaatacagaacaaggctttgtaaagatga |
31810894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 733 - 891
Target Start/End: Original strand, 25816165 - 25816323
Alignment:
| Q |
733 |
ttcgaccgttgtatgcttctaccggttctgctctaccttcacctacatcgtattcaaattcaccaagtgcttcttcaatggattctttcacattgagctc |
832 |
Q |
| |
|
|||| |||||| ||||| ||||| |||||||| | ||| ||||||||| |||||||||||||||||||||||| |||||| | |||||||||||||||| |
|
|
| T |
25816165 |
ttcgcccgttgaatgctactaccagttctgctttgcctccacctacattttattcaaattcaccaagtgcttctgcaatggttcctttcacattgagctc |
25816264 |
T |
|
| Q |
833 |
tccgtcttcttcgatacaatctgcgtcgacaccacctttgactccatctgcaacatcat |
891 |
Q |
| |
|
||||| | ||| |||||||||| | || | ||||||| ||| || ||||||| ||||| |
|
|
| T |
25816265 |
tccgtatgctttgatacaatcttcatcaatgccaccttggacaccgtctgcaatatcat |
25816323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 491 - 537
Target Start/End: Complemental strand, 9314827 - 9314781
Alignment:
| Q |
491 |
tctcatgattggactgagtgcccctttgttcatcctggggagaatgc |
537 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||| |||||||| |
|
|
| T |
9314827 |
tctcatgattggactgagtgtccttttgtgcatcctggagagaatgc |
9314781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 611 - 680
Target Start/End: Original strand, 25816029 - 25816098
Alignment:
| Q |
611 |
aaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaa |
680 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| | | |||| |||||| || ||||||||||| |
|
|
| T |
25816029 |
aaaggggatgcatgtgaatatgcacatggtgcttttgagtccgggctgcatcctagtcgatacagaacaa |
25816098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 8e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 413 - 696
Target Start/End: Original strand, 30122217 - 30122500
Alignment:
| Q |
413 |
gacataaaaaatggaatatatagtacagatgaatttaggatgtttacattcaaagtgaagccttgttcaagggcttattctcatgattggactgagtgcc |
512 |
Q |
| |
|
||||| || ||||| ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
30122217 |
gacattaagaatgggatatatagtaccgatgagtttaggatgtatacattcaaagtgaagccttgttcaagggcttattctcatgattggaccgagtgtc |
30122316 |
T |
|
| Q |
513 |
cctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacatgtgtcccttgccccgagtttcggaagagatcatgcaacaa |
612 |
Q |
| |
|
| ||||||||||| ||||| ||||||||||| || ||||| |||||||||||||| | || |||||||| || ||||||||||| |||| |||| || |
|
|
| T |
30122317 |
cttttgttcatccaggggaaaatgcaaggcgacgcgatccaaggaaatatcattatagctgcgtcccttgtcctgagtttcggaaaggatcttgcagtaa |
30122416 |
T |
|
| Q |
613 |
aggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaaggatga |
696 |
Q |
| |
|
||| ||| ||||||| |||||||| ||||||||||| ||||||||||||||||| || || | ||| |||||||||||||||| |
|
|
| T |
30122417 |
aggagattcttgtgactatgcacacggtatttttgagtgctggcttcatcctgcgcagtataagacacggctttgcaaggatga |
30122500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 438 - 693
Target Start/End: Original strand, 35643642 - 35643897
Alignment:
| Q |
438 |
cagatgaatttaggatgtttacattcaaagtgaagccttgttcaagggcttattctcatgattggactgagtgcccctttgttcatcctggggagaatgc |
537 |
Q |
| |
|
||||||| |||||||||| | ||||| |||||||| || || |||||||| ||||| |||||||| ||||| |||||||||||||| || |||||||| |
|
|
| T |
35643642 |
cagatgagtttaggatgtacagtttcaaggtgaagccatgctcgagggcttactctcacgattggacggagtgtccctttgttcatccaggtgagaatgc |
35643741 |
T |
|
| Q |
538 |
aaggcgccgtgatccgaggaaatatcattacacatgtgtcccttgccccgagtttcggaagagatcatgcaacaaaggggatgcttgtgaatatgcacat |
637 |
Q |
| |
|
|||| | | || || |||||||| | ||||| ||||| || ||||| |||||||| || | || ||| | ||||||||| ||||||| ||||||||| |
|
|
| T |
35643742 |
aaggaggagagacccaaggaaatacccttacagctgtgttccctgcccagagtttcgcaaagggtcttgccagaaaggggattcttgtgagtatgcacat |
35643841 |
T |
|
| Q |
638 |
ggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaagga |
693 |
Q |
| |
|
||| |||| || | ||||| ||||| || |||||| ||||||||||||||||||| |
|
|
| T |
35643842 |
ggtgttttcgagtcatggctacatcccgcacaataccgaacaaggctttgcaagga |
35643897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 485 - 582
Target Start/End: Original strand, 36456258 - 36456355
Alignment:
| Q |
485 |
gcttattctcatgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacatgtgtcccttg |
582 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||||||||| ||||||||||| || | | || ||||| || |||||||||| ||||||||||| |
|
|
| T |
36456258 |
gcttattcccatgattggactgaatgcccttttgttcatccaggggagaatgcccggagaagggacccgagaaagtatcattacagctgtgtcccttg |
36456355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 678
Target Start/End: Complemental strand, 38748230 - 38748173
Alignment:
| Q |
621 |
cttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaac |
678 |
Q |
| |
|
||||||||| || ||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38748230 |
cttgtgaattcgctcatggcgtttttgaatgctggcttcatcctgctagatacagaac |
38748173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University