View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2728R-Insertion-3 (Length: 931)
Name: NF2728R-Insertion-3
Description: NF2728R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2728R-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 364
Target Start/End: Complemental strand, 43408450 - 43408095
Alignment:
| Q |
9 |
catattgctgttgctgctgatgacgcggatagtcatggcttctaaagaaacgaacatgaacgttcatgtttggattcacagaaacaggtgcagatgatga |
108 |
Q |
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| T |
43408450 |
catattgctgttgctgctgatgacgcggatagtcatggcttctaaagaaacgaacatgaacgttcatgtttggattcacagaaacaggtgcagatgatga |
43408351 |
T |
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| Q |
109 |
ctcctgctgaaggtagtggttttgagtgtgaattagggctgatctcctcctcataggtacccatatctgaataaggacgttgttggatgagttctttgtg |
208 |
Q |
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| T |
43408350 |
ctcctgctgaaggtagtggttttgagtgtgaattagggctgatctcctcctcataggtacccatatctgaataaggacgttgttggatgagttctttgtg |
43408251 |
T |
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| Q |
209 |
tactcttttaagtaaccaacagcaaccactaatctttctttgacagatgttgttggacctggatttgccctaggcccaatccaccatctcttcccaacaa |
308 |
Q |
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| T |
43408250 |
tactcttttaagtaaccaacagcaaccactaatctttctttgacagatgttgttggacctggatttgccctaggcccaatccaccatctcttcccaacaa |
43408151 |
T |
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| Q |
309 |
caaaaccactttcctgctgatcatcatgatttgctgctggagcagtgcattccatt |
364 |
Q |
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| T |
43408150 |
caaaaccactttcctgctgatcatcatgatttgctgctggagcagtgcattccatt |
43408095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 393 - 853
Target Start/End: Complemental strand, 43408057 - 43407603
Alignment:
| Q |
393 |
tgaagtgatctccctctcccattcccataggaatattattattgttggacatgtattgtgattgtggcgtagtttgctgcatggacatcaaactgttctc |
492 |
Q |
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| T |
43408057 |
tgaagtgatctccctctcccattcccataggaatattattattgttggacatgtattgtgattgtggcgtagtttgctgcatggccatcaaactattctc |
43407958 |
T |
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| Q |
493 |
acttgcttcaatccagcaaccttctcccaagagctcctcaattatatctgcttgatnnnnnnnnnnnnnnnnnnnnnncaccatcggtccaaacacacca |
592 |
Q |
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| T |
43407957 |
acttgcttcaatccagcaaccttctcccaacagctcctcaattatatctgcttgatctcctcctcctcctcc------caccatcggtccaaacacacca |
43407864 |
T |
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| Q |
593 |
ccgtcagccactaacccaccaccatattccatccttataattaaagttctttctcagatcctcctatataaaaagatcagaagatatcattcatgtcaag |
692 |
Q |
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| T |
43407863 |
ccgtcagccactaacccaccaccatattccatccttataattaaagttgtttctcagatcctcctatataaaaagatcagaagatatcattcatgtcatg |
43407764 |
T |
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| Q |
693 |
atatatattagagaaagggaatgaagaagagagtgaatt----aattaattaaagtagttgaggagaacacgtacgtagtagaataataagtacgcaaat |
788 |
Q |
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|||||||||||||||||||||||||| | ||||| |||| |||||| | ||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
43407763 |
atatatattagagaaagggaatgaagga-agagtcaattattaaattaagttaagtagttgaggagaacacgtac---gtagaataataagtacggaaat |
43407668 |
T |
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| Q |
789 |
taaagagaaatgaaaaaaggaaataaataaggtatgtgatgtgtgtgtagctgcaggcaggatag |
853 |
Q |
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| T |
43407667 |
taaagagaaatgaaacaaggaaataaattaggtatgtgatgtgtgtgaagctgcaggcaggatag |
43407603 |
T |
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