View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2728R-Insertion-6 (Length: 608)

Name: NF2728R-Insertion-6
Description: NF2728R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2728R-Insertion-6
NF2728R-Insertion-6
[»] chr1 (22 HSPs)
chr1 (7-483)||(29059131-29059605)
chr1 (511-608)||(29059006-29059103)
chr1 (513-606)||(29052234-29052331)
chr1 (150-203)||(4859085-4859138)
chr1 (149-207)||(12852204-12852262)
chr1 (149-187)||(51067916-51067954)
chr1 (154-203)||(35527924-35527973)
chr1 (149-205)||(12213994-12214050)
chr1 (151-203)||(39949815-39949867)
chr1 (148-206)||(10356717-10356776)
chr1 (149-188)||(35690213-35690252)
chr1 (149-203)||(4770634-4770688)
chr1 (153-187)||(4799164-4799198)
chr1 (152-206)||(4897171-4897225)
chr1 (149-203)||(11410628-11410682)
chr1 (149-203)||(26256095-26256149)
chr1 (149-203)||(41677596-41677650)
chr1 (153-206)||(2884451-2884504)
chr1 (149-194)||(47835730-47835775)
chr1 (174-206)||(24170143-24170175)
chr1 (338-374)||(29052482-29052518)
chr1 (147-203)||(34083336-34083392)
[»] chr4 (11 HSPs)
chr4 (153-195)||(15023007-15023049)
chr4 (149-206)||(11949666-11949723)
chr4 (153-206)||(12588843-12588896)
chr4 (149-202)||(18635531-18635584)
chr4 (149-206)||(18903761-18903818)
chr4 (149-206)||(30135141-30135198)
chr4 (149-206)||(38939537-38939594)
chr4 (144-204)||(46779133-46779193)
chr4 (149-187)||(7371570-7371608)
chr4 (149-206)||(4911604-4911660)
chr4 (149-206)||(14202482-14202539)
[»] chr6 (6 HSPs)
chr6 (149-206)||(9311933-9311990)
chr6 (146-200)||(10787642-10787695)
chr6 (153-202)||(20713104-20713153)
chr6 (158-206)||(8138461-8138509)
chr6 (144-205)||(24248161-24248222)
chr6 (151-203)||(2445302-2445354)
[»] chr3 (21 HSPs)
chr3 (149-206)||(40644631-40644688)
chr3 (142-188)||(39100437-39100483)
chr3 (149-205)||(3612186-3612242)
chr3 (149-197)||(11574254-11574302)
chr3 (149-188)||(38573594-38573633)
chr3 (149-187)||(10843803-10843841)
chr3 (149-203)||(17588363-17588417)
chr3 (149-203)||(22486684-22486738)
chr3 (149-203)||(23882831-23882885)
chr3 (149-187)||(47099057-47099095)
chr3 (149-203)||(53633623-53633677)
chr3 (153-206)||(2186430-2186483)
chr3 (153-206)||(21160057-21160110)
chr3 (149-206)||(35126272-35126329)
chr3 (154-203)||(41151468-41151517)
chr3 (149-206)||(52340525-52340582)
chr3 (149-206)||(54243386-54243443)
chr3 (154-206)||(1111844-1111896)
chr3 (150-206)||(17755123-17755179)
chr3 (150-206)||(19056443-19056499)
chr3 (149-189)||(48673867-48673907)
[»] chr2 (13 HSPs)
chr2 (154-194)||(11764390-11764430)
chr2 (149-203)||(27934863-27934917)
chr2 (145-192)||(10991539-10991586)
chr2 (150-188)||(11846399-11846437)
chr2 (148-182)||(31935831-31935865)
chr2 (149-194)||(8775271-8775316)
chr2 (149-206)||(10195665-10195722)
chr2 (149-202)||(16204824-16204877)
chr2 (153-206)||(17842715-17842768)
chr2 (149-206)||(41165436-41165493)
chr2 (147-187)||(5168601-5168641)
chr2 (149-185)||(9718395-9718431)
chr2 (151-203)||(12619347-12619399)
[»] chr8 (6 HSPs)
chr8 (159-206)||(9727349-9727396)
chr8 (149-203)||(19701350-19701404)
chr8 (158-206)||(3757960-3758008)
chr8 (149-202)||(17913934-17913987)
chr8 (149-206)||(28439960-28440017)
chr8 (150-206)||(29546895-29546951)
[»] chr5 (10 HSPs)
chr5 (149-208)||(36623175-36623234)
chr5 (150-194)||(10045334-10045378)
chr5 (158-206)||(16094067-16094115)
chr5 (153-188)||(42178826-42178861)
chr5 (149-203)||(23118057-23118111)
chr5 (158-203)||(2705522-2705567)
chr5 (153-206)||(5614770-5614823)
chr5 (149-206)||(13864345-13864402)
chr5 (146-187)||(31159427-31159468)
chr5 (149-206)||(36170056-36170113)
[»] chr7 (12 HSPs)
chr7 (149-206)||(24614696-24614753)
chr7 (149-206)||(34000263-34000320)
chr7 (148-192)||(15015241-15015285)
chr7 (149-187)||(429200-429238)
chr7 (153-203)||(31723410-31723460)
chr7 (150-188)||(46856083-46856121)
chr7 (149-206)||(5458074-5458131)
chr7 (149-206)||(5526726-5526783)
chr7 (149-206)||(25251511-25251568)
chr7 (149-206)||(37230031-37230088)
chr7 (149-206)||(43539107-43539164)
chr7 (147-187)||(32855519-32855559)
[»] scaffold0070 (1 HSPs)
scaffold0070 (151-187)||(42954-42990)
[»] scaffold1064 (1 HSPs)
scaffold1064 (149-206)||(652-709)


Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 7 - 483
Target Start/End: Complemental strand, 29059605 - 29059131
Alignment:
Q  7 catgtacttgggtgtggtctcaatgaaatgaatctacacatccactgtctagtcctcatatcattatctcagatgtatgatatgaatatgatagccttaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29059605 catgtacttgggtgtggtctcaatgaaatgaatctacacatccactgtctagtcctcatatcattatctcagatgtatgatatgaatgtgatagccttaa 29059506  T
Q  107 aatccttaatcattaagttagaaaacacactgggctgtcccatgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||||||||||||||||||||||||  | || |||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| || ||||||    
T  29059505 aatccttaatcattaagttagaaaacac--taggttgtcccatgagcttaattcagttggtaagaataatgcataatatatataagatctaggattcaaa 29059408  T
Q  207 aatagaaaatagagggtgctcctaaaacaaaggttagaaattatagcatgattaggtaaataaagattattgaactttgaagtggctatattaaatatta 306  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29059407 tatagaaaatagagggtgctcctaaaacaaaggttagaaattatagcatgattaggtaaataaagattattgaactttgaagtggctatattaaatatta 29059308  T
Q  307 gtactagcatgaaaggtatatggaacatgatatatgtcattttacccaaaggcttctctaccacaataggtatcttatannnnnnnagggagacacatat 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||| |||    
T  29059307 gtactagcatgaaaggtatatggaacatgatatatgtcattttacccaaaggcttctctaccacaataggtatcttatatttttttagggagacacgtat 29059208  T
Q  407 tttacaatttgtatatttggtatggtgaatctctaagtataagaaatcctaaaggagcaatataatttgtgaatgga 483  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29059207 tttacaatttgtatatttggtatggtgaatctctaagtataagaaatcctaaaggagcaatataatttgtgaatgga 29059131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 511 - 608
Target Start/End: Complemental strand, 29059103 - 29059006
Alignment:
Q  511 gcctaatctataactgaccaattctacataattcactcttttgaagggtctctgtccctctatcaataggcttacaagtaattattttttggtcaccg 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29059103 gcctaatctataactgaccaattctacataattcactcttttgaagggtctctgtccctctatcaataggcttacaagtaattattttttggtcaccg 29059006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 513 - 606
Target Start/End: Complemental strand, 29052331 - 29052234
Alignment:
Q  513 ctaatctataactgaccaattctacataattcactcttttgaagg----gtctctgtccctctatcaataggcttacaagtaattattttttggtcac 606  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||     ||||| |||||||||||||||||||||  | |||||||||||||||||    
T  29052331 ctaatctataactgaccaattctacataatccactcttttaaaggcctcatctctatccctctatcaataggcttactgggaattattttttggtcac 29052234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 4859085 - 4859138
Alignment:
Q  150 gagcttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  4859085 gagcttaactcagttgataagaataatacataatatatgtaaggtctggggttc 4859138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 12852262 - 12852204
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaaa 207  Q
    |||| |||||||||||| || | ||||| |||||||||| |||||||||||||||||||    
T  12852262 tgaggttaactcagttggtagggataatgcataatatatgtaagatctggggttcaaaa 12852204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 51067954 - 51067916
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatat 187  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  51067954 tgagcttaactcagttggtaagaataatacataatatat 51067916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 35527924 - 35527973
Alignment:
Q  154 ttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    |||||||||||||||| |||||| ||||||||||||||| | ||||||||    
T  35527924 ttaactcagttgataaaaataatgcataatatatataaggtttggggttc 35527973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 12213994 - 12214050
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaa 205  Q
    |||||||| ||||||||||| ||| ||||||||||||||  ||| ||||||||||||    
T  12213994 tgagcttagctcagttgataggaacaatacataatatatgcaaggtctggggttcaa 12214050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 39949815 - 39949867
Alignment:
Q  151 agcttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    ||||||||||||||| |||||| ||| ||||||||||| ||| ||||||||||    
T  39949815 agcttaactcagttggtaagaacaatgcataatatatacaaggtctggggttc 39949867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 10356776 - 10356717
Alignment:
Q  148 atgagcttaactcagttgata-agaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||||||||||||||||| |||| ||| ||||||||||  ||| |||||||||||||    
T  10356776 atgagcttaactcagttgatagagaaaaatgcataatatatgcaaggtctggggttcaaa 10356717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 35690213 - 35690252
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatata 188  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  35690213 tgagcttaactcagttggtaggaataatacataatatata 35690252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 4770688 - 4770634
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    |||||||||||||||||||| ||| ||| ||| ||||||||||| |||| |||||    
T  4770688 tgagcttaactcagttgatatgaacaatgcatgatatatataaggtctgaggttc 4770634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 4799198 - 4799164
Alignment:
Q  153 cttaactcagttgataagaataatacataatatat 187  Q
    |||||||||||||||||||||||| ||||||||||    
T  4799198 cttaactcagttgataagaataatccataatatat 4799164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 4897225 - 4897171
Alignment:
Q  152 gcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||||||||||||| ||   | || ||||||||||||||||||||||||||||||    
T  4897225 gcttaactcagttgctatagacaagacataatatatataagatctggggttcaaa 4897171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 11410628 - 11410682
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    ||||||||||||||||| || ||| ||||||||| |||| |||| ||||||||||    
T  11410628 tgagcttaactcagttggtatgaacaatacataaaatatgtaaggtctggggttc 11410682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 26256149 - 26256095
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    ||||||||||||||||||||||  |||| ||||||||||  |||||| |||||||    
T  26256149 tgagcttaactcagttgataagggtaatgcataatatatgcaagatccggggttc 26256095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 41677650 - 41677596
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    |||||||| |||||||| |||| | |||||||||||||| ||||||| |||||||    
T  41677650 tgagcttagctcagttggtaaggacaatacataatatatgtaagatccggggttc 41677596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 2884504 - 2884451
Alignment:
Q  153 cttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||||||||||||||| | | ||| ||||||||||| |||||| ||||||||||    
T  2884504 cttaactcagttgatatggacaatgcataatatatacaagatcgggggttcaaa 2884451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 47835775 - 47835730
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagat 194  Q
    |||| |||||||||||||||| || ||||||||||||||| |||||    
T  47835775 tgagtttaactcagttgataaaaacaatacataatatatacaagat 47835730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 24170175 - 24170143
Alignment:
Q  174 aatacataatatatataagatctggggttcaaa 206  Q
    |||||||||||||| ||||||||||||||||||    
T  24170175 aatacataatatatgtaagatctggggttcaaa 24170143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 29052518 - 29052482
Alignment:
Q  338 atatgtcattttacccaaaggcttctctaccacaata 374  Q
    |||||||||||||||||| |||||||||| |||||||    
T  29052518 atatgtcattttacccaatggcttctctaacacaata 29052482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 34083336 - 34083392
Alignment:
Q  147 catgagcttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    |||||||||||||||| || |||||| ||| |||||||||| |||| | ||||||||    
T  34083336 catgagcttaactcagatggtaagaacaatgcataatatatgtaaggtttggggttc 34083392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 15023049 - 15023007
Alignment:
Q  153 cttaactcagttgataagaataatacataatatatataagatc 195  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  15023049 cttaactcagttgctaagaataatacataatatatataagatc 15023007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 11949723 - 11949666
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||||||| ||||||||||||||| ||||||||||||||| || ||  ||||||||||    
T  11949723 tgagcttagctcagttgataagaacaatacataatatatacaaaattcggggttcaaa 11949666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 12588896 - 12588843
Alignment:
Q  153 cttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||||||||| || ||| ||||||||| |||||||||||||| ||||||||    
T  12588896 cttaactcagttggtatgaacaatacataaaatatataagatctgaggttcaaa 12588843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 18635531 - 18635584
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggtt 202  Q
    |||||||||||||||||||||| | ||| ||||||||||| ||| |||||||||    
T  18635531 tgagcttaactcagttgataaggacaatgcataatatatacaaggtctggggtt 18635584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 18903818 - 18903761
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||| ||| |||||||||||| |||||| |||||||||| |||| |||||||||||||    
T  18903818 tgagtttagctcagttgataaaaataatgcataatatatgtaaggtctggggttcaaa 18903761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 30135141 - 30135198
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||||||||||||||||||||| ||||| |||||||||| | ||||| | ||||||||    
T  30135141 tgagcttaactcagttgataaggataatgcataatatatgtcagatccgaggttcaaa 30135198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 38939594 - 38939537
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||||| | ||||| ||||||| ||||| ||||||||||||||| |||||||||||||    
T  38939594 tgagctaagctcagctgataaggataatgcataatatatataaggtctggggttcaaa 38939537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 46779133 - 46779193
Alignment:
Q  144 tcccatgagcttaactcagttgataagaataatacataatatatataagatctggggttca 204  Q
    |||| ||||||||||||| |||||| ||||||| | |||||||| |||||| |||||||||    
T  46779133 tcccgtgagcttaactcaattgataggaataatgcgtaatatatgtaagatttggggttca 46779193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 7371608 - 7371570
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatat 187  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  7371608 tgagcttaactcagttgataaggacaatacataatatat 7371570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 4911660 - 4911604
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||||||||||||||||||||| || || |||||||||| |||| |||| ||||||||    
T  4911660 tgagcttaactcagttgataaggat-atgcataatatatgtaaggtctgaggttcaaa 4911604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 14202539 - 14202482
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||||||||||||||||||  | ||||| |||||||||| |||| || ||||||||||    
T  14202539 tgagcttaactcagttgatttggataatgcataatatatgtaaggtccggggttcaaa 14202482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 9311990 - 9311933
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||||||||||||| || |||||||||||||||||| |||||| || ||||||||    
T  9311990 tgagcttaactcagttggtatgaataatacataatatatgtaagatttgaggttcaaa 9311933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 10787695 - 10787642
Alignment:
Q  146 ccatgagcttaactcagttgataagaataatacataatatatataagatctgggg 200  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||| |||||||    
T  10787695 ccatgaggttaactcagttgataa-aataatgcataatatatataaggtctgggg 10787642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 20713104 - 20713153
Alignment:
Q  153 cttaactcagttgataagaataatacataatatatataagatctggggtt 202  Q
    ||||||||| |||||||| |||||| |||||||||||||||| |||||||    
T  20713104 cttaactcaattgataaggataatatataatatatataagatatggggtt 20713153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 8138509 - 8138461
Alignment:
Q  158 ctcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||||||||||| ||| |||||||||| |||| |||||||||||||    
T  8138509 ctcagttgataagaacaatgcataatatatgtaaggtctggggttcaaa 8138461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 24248161 - 24248222
Alignment:
Q  144 tcccatgagcttaactcagttgataagaataatacataatatatataagatctggggttcaa 205  Q
    |||| |||||||| | |||||| |||| |||||||||||||||| |||| || |||||||||    
T  24248161 tcccgtgagcttagcacagttggtaaggataatacataatatatgtaaggtccggggttcaa 24248222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 2445302 - 2445354
Alignment:
Q  151 agcttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    |||||||||||||||||| ||| ||| ||||||||||| |||||  |||||||    
T  2445302 agcttaactcagttgatatgaacaatgcataatatatacaagattcggggttc 2445354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 40644631 - 40644688
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||| |||||||||||  |||||| || ||||||||||||||||||||||||||||||    
T  40644631 tgagtttaactcagtttgtaagaacaacacataatatatataagatctggggttcaaa 40644688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 39100483 - 39100437
Alignment:
Q  142 tgtcccatgagcttaactcagttgataagaataatacataatatata 188  Q
    |||| |||||||||||||||||||||||||| ||| |||||||||||    
T  39100483 tgtcacatgagcttaactcagttgataagaacaatgcataatatata 39100437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 3612242 - 3612186
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaa 205  Q
    |||||||| ||||||||||| | ||||| ||||||||||||||| || |||||||||    
T  3612242 tgagcttagctcagttgatatggataatgcataatatatataagctccggggttcaa 3612186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 11574254 - 11574302
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctg 197  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||| ||||    
T  11574254 tgagcttaactcagttgataaggataatgcataatatatacaaggtctg 11574302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 38573633 - 38573594
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatata 188  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  38573633 tgagcttaactcagttgataagaacaatgcataatatata 38573594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 10843841 - 10843803
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatat 187  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  10843841 tgagcttaactcagttggtatgaataatacataatatat 10843803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 17588363 - 17588417
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    ||||||||||||||||| |||| | ||| ||||||||||  ||||||||||||||    
T  17588363 tgagcttaactcagttggtaaggacaatgcataatatatgcaagatctggggttc 17588417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 22486684 - 22486738
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    ||||||||||||||||| |||||| ||| ||||||||||  ||||| ||||||||    
T  22486684 tgagcttaactcagttggtaagaacaatgcataatatatgcaagatttggggttc 22486738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 23882831 - 23882885
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    |||||||| ||||||||||||| | ||| |||||||| |||||| ||||||||||    
T  23882831 tgagcttagctcagttgataaggacaattcataatatttataaggtctggggttc 23882885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 47099095 - 47099057
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatat 187  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  47099095 tgagcttagctcagttgataagaataatgcataatatat 47099057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 53633677 - 53633623
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    ||||||||||||||||| |||| ||||| |||||||||| |||| || |||||||    
T  53633677 tgagcttaactcagttggtaaggataatgcataatatatgtaaggtccggggttc 53633623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 2186483 - 2186430
Alignment:
Q  153 cttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||||||||| || | | |||||||||||||| |||| |||||||||||||    
T  2186483 cttaactcagttggtatggacaatacataatatatgtaaggtctggggttcaaa 2186430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 21160057 - 21160110
Alignment:
Q  153 cttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||||||||||||||| | ||||| |||||||||| |||| || ||||||||||    
T  21160057 cttaactcagttgatatggataatgcataatatatgtaaggtcgggggttcaaa 21160110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 35126329 - 35126272
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||| |||||||||||| || | ||||| ||||||||||  |||||||||||||||||    
T  35126329 tgagtttaactcagttggtagggataatgcataatatatgcaagatctggggttcaaa 35126272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 41151468 - 41151517
Alignment:
Q  154 ttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    |||||||||||| ||| ||||||||||||||||| | | |||||||||||    
T  41151468 ttaactcagttggtaaaaataatacataatatatgttaaatctggggttc 41151517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 52340525 - 52340582
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||||||||||||  || |||||| ||| |||||||||| |||||| |||||||||||    
T  52340525 tgagcttaactcaactgttaagaaaaattcataatatatgtaagatttggggttcaaa 52340582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 54243386 - 54243443
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||||||||||||| |||| |  || |||||||||| ||||||| ||||||||||    
T  54243386 tgagcttaactcagttggtaagcacgatgcataatatatttaagatccggggttcaaa 54243443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 1111896 - 1111844
Alignment:
Q  154 ttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||||||||||| | | ||||||||||||||  ||| |||||||||||||    
T  1111896 ttaactcagttgatagggacaatacataatatatgcaaggtctggggttcaaa 1111844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 17755123 - 17755179
Alignment:
Q  150 gagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||| ||||||||||| ||| |||||||||||||| |||| |  ||||||||||    
T  17755123 gagcttagctcagttgataggaacaatacataatatatgtaaggttcggggttcaaa 17755179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 19056443 - 19056499
Alignment:
Q  150 gagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||| ||||||||||| ||| |||||||||||||| |||| |  ||||||||||    
T  19056443 gagcttagctcagttgataggaacaatacataatatatgtaaggttcggggttcaaa 19056499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 48673907 - 48673867
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatat 189  Q
    |||| |||||||||||| |||| ||||||||||||||||||    
T  48673907 tgagtttaactcagttggtaaggataatacataatatatat 48673867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 11764390 - 11764430
Alignment:
Q  154 ttaactcagttgataagaataatacataatatatataagat 194  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  11764390 ttaactcagttgataagaataatgcataatatatataagat 11764430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 27934917 - 27934863
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    |||||||| |||||||| |||| | ||||||||||||||| ||||||||||||||    
T  27934917 tgagcttagctcagttggtaaggacaatacataatatatacaagatctggggttc 27934863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 10991539 - 10991586
Alignment:
Q  145 cccatgagcttaactcagttgataagaataatacataatatatataag 192  Q
    ||||||||||||||||||||| |||| | |||||||||||||| ||||    
T  10991539 cccatgagcttaactcagttggtaaggacaatacataatatatgtaag 10991586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 11846399 - 11846437
Alignment:
Q  150 gagcttaactcagttgataagaataatacataatatata 188  Q
    |||||||||||||||| || |||||||||||||||||||    
T  11846399 gagcttaactcagttggtaggaataatacataatatata 11846437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 31935865 - 31935831
Alignment:
Q  148 atgagcttaactcagttgataagaataatacataa 182  Q
    |||| ||||||||||||||||||||||||||||||    
T  31935865 atgaacttaactcagttgataagaataatacataa 31935831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 8775271 - 8775316
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagat 194  Q
    ||||||||  |||||||||| |||||||||||||||||| ||||||    
T  8775271 tgagcttaggtcagttgataggaataatacataatatatgtaagat 8775316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 10195722 - 10195665
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||||||| ||||||||||| | ||||| ||||||||||  ||||||||| |||||||    
T  10195722 tgagcttagctcagttgatatggataatgcataatatatgcaagatctggagttcaaa 10195665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 16204877 - 16204824
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggtt 202  Q
    |||||||||||||||||||||| | ||| ||||||||||  ||| |||||||||    
T  16204877 tgagcttaactcagttgataaggacaatgcataatatatgcaaggtctggggtt 16204824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 17842768 - 17842715
Alignment:
Q  153 cttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||| |||||||||||| ||| |||||||||| ||||||| || |||||||    
T  17842768 cttaacttagttgataagaacaatgcataatatatgtaagatccggagttcaaa 17842715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 41165436 - 41165493
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||||||||||||| || | ||||| ||||||||||||||| | || ||||||||    
T  41165436 tgagcttaactcagttgttatggataatgcataatatatataaggtatgaggttcaaa 41165493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 5168641 - 5168601
Alignment:
Q  147 catgagcttaactcagttgataagaataatacataatatat 187  Q
    |||||||||||||||||||||| | ||||| ||||||||||    
T  5168641 catgagcttaactcagttgatagggataatgcataatatat 5168601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 9718395 - 9718431
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatat 185  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  9718395 tgagcttaactcagttgataagaacaatgcataatat 9718431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 12619347 - 12619399
Alignment:
Q  151 agcttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    |||||| ||||||||||||  ||||| ||||||||||  ||||||||||||||    
T  12619347 agcttagctcagttgataatgataatgcataatatatgcaagatctggggttc 12619399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 9727396 - 9727349
Alignment:
Q  159 tcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  9727396 tcagttaataagaataatgcataatatatataagatcaggggttcaaa 9727349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 19701404 - 19701350
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    |||| ||||||||||||||||| ||||| |||||||||| |||| ||||||||||    
T  19701404 tgagtttaactcagttgataaggataatgcataatatatgtaaggtctggggttc 19701350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 3758008 - 3757960
Alignment:
Q  158 ctcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||||||| ||| ||| |||||||||| ||||||||||||||||||    
T  3758008 ctcagttgataggaacaatgcataatatatgtaagatctggggttcaaa 3757960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 17913934 - 17913987
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggtt 202  Q
    |||||||| ||||||||||||| |||||||||||| | | |||| |||||||||    
T  17913934 tgagcttagctcagttgataaggataatacataatgtttgtaaggtctggggtt 17913987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 28439960 - 28440017
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||| |||| |||||||||||  ||||| |||||||||| |||| |||||||||||||    
T  28439960 tgagtttaattcagttgataaagataatgcataatatatgtaaggtctggggttcaaa 28440017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 29546895 - 29546951
Alignment:
Q  150 gagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||||||||||||||| | | |||| |||||||||  ||| |||||||||||||    
T  29546895 gagcttaactcagttgatagggacaatagataatatatgcaaggtctggggttcaaa 29546951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 36623234 - 36623175
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaaaa 208  Q
    |||||||||||||||||||||||||||| ||||||||||  ||| ||| | |||||||||    
T  36623234 tgagcttaactcagttgataagaataatgcataatatatgcaaggtctagagttcaaaaa 36623175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 10045334 - 10045378
Alignment:
Q  150 gagcttaactcagttgataagaataatacataatatatataagat 194  Q
    |||||||||||||||| |||  |||||||||||||||||||||||    
T  10045334 gagcttaactcagttggtaaagataatacataatatatataagat 10045378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 16094067 - 16094115
Alignment:
Q  158 ctcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||||||| | ||||| |||||||||| ||||||||||||||||||    
T  16094067 ctcagttgatagggataatgcataatatatgtaagatctggggttcaaa 16094115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 188
Target Start/End: Complemental strand, 42178861 - 42178826
Alignment:
Q  153 cttaactcagttgataagaataatacataatatata 188  Q
    ||||||||| ||||||||||||||||||||||||||    
T  42178861 cttaactcaattgataagaataatacataatatata 42178826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 23118111 - 23118057
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    |||||||||||||||||||||| | ||| |||||||||| |||| | ||||||||    
T  23118111 tgagcttaactcagttgataaggacaatgcataatatatgtaaggtttggggttc 23118057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 2705567 - 2705522
Alignment:
Q  158 ctcagttgataagaataatacataatatatataagatctggggttc 203  Q
    ||||||||||||||| |||||||||||||| |||| |||| |||||    
T  2705567 ctcagttgataagaacaatacataatatatgtaaggtctgaggttc 2705522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 5614770 - 5614823
Alignment:
Q  153 cttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||||||||||||||| | ||||| |||||||||| |||| || ||||||||||    
T  5614770 cttaactcagttgatatggataatgcataatatatgtaaggtcgggggttcaaa 5614823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 13864345 - 13864402
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||||||||||||| || ||| ||||||||||||||  ||| || ||||||||||    
T  13864345 tgagcttaactcagttggtatgaacaatacataatatatgcaaggtccggggttcaaa 13864402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 31159427 - 31159468
Alignment:
Q  146 ccatgagcttaactcagttgataagaataatacataatatat 187  Q
    ||||||||||||||||||||||||  | ||||||||||||||    
T  31159427 ccatgagcttaactcagttgataaagacaatacataatatat 31159468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 36170056 - 36170113
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||||||||| ||| || ||||||| |||||||||| |||||| || ||||||||    
T  36170056 tgagcttaactcaattgctaggaataatgcataatatatgtaagatatgaggttcaaa 36170113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 24614696 - 24614753
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||  ||||| |||||||    
T  24614696 tgagtttaactcagttgataggaataatgcataatatatataatgtctggagttcaaa 24614753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 34000263 - 34000320
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||||||||||||||||||||| ||||| |||||||||| |||| |  ||||||||||    
T  34000263 tgagcttaactcagttgataaggataatgcataatatatgtaaggttcggggttcaaa 34000320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 15015241 - 15015285
Alignment:
Q  148 atgagcttaactcagttgataagaataatacataatatatataag 192  Q
    ||||||||||||||||||||||||| ||| |||||||||| ||||    
T  15015241 atgagcttaactcagttgataagaacaatgcataatatatgtaag 15015285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 429238 - 429200
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatat 187  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  429238 tgagcttaactcagttgatatggataatacataatatat 429200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 31723460 - 31723410
Alignment:
Q  153 cttaactcagttgataagaataatacataatatatataagatctggggttc 203  Q
    |||||||||||||||||||| |||| |||||||||  |||||||| |||||    
T  31723460 cttaactcagttgataagaacaatatataatatatgcaagatctgaggttc 31723410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 46856083 - 46856121
Alignment:
Q  150 gagcttaactcagttgataagaataatacataatatata 188  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  46856083 gagcctaactcagttgataggaataatacataatatata 46856121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 5458131 - 5458074
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||||||| ||||||||||||||| ||| ||||||||||  ||| |||||| ||||||    
T  5458131 tgagcttagctcagttgataagaacaatgcataatatatgcaaggtctgggattcaaa 5458074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 5526726 - 5526783
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||||||| |||||||| || | | ||| ||||||||||||||||| |||||||||||    
T  5526726 tgagcttagctcagttggtatggacaatgcataatatatataagatttggggttcaaa 5526783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 25251511 - 25251568
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||||||||||||| ||  || ||| ||||||||||||||| | |||||||||||    
T  25251511 tgagcttaactcagttggtataaacaatgcataatatatataaggtttggggttcaaa 25251568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 37230088 - 37230031
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||||||||||||| |||| | ||| ||||||||||  ||| |||||||||||||    
T  37230088 tgagcttaactcagttggtaaggaaaatgcataatatatgcaaggtctggggttcaaa 37230031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 43539164 - 43539107
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    |||||||| ||||||||||| ||| ||| |||||||||| |||| || ||||||||||    
T  43539164 tgagcttagctcagttgataggaacaatgcataatatatgtaaggtccggggttcaaa 43539107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 32855519 - 32855559
Alignment:
Q  147 catgagcttaactcagttgataagaataatacataatatat 187  Q
    ||||| |||||||||||||||| ||||||| ||||||||||    
T  32855519 catgaacttaactcagttgatatgaataatgcataatatat 32855559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 42990 - 42954
Alignment:
Q  151 agcttaactcagttgataagaataatacataatatat 187  Q
    |||||||||||||||||||||||||| ||||||||||    
T  42990 agcttaactcagttgataagaataatgcataatatat 42954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1064 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 652 - 709
Alignment:
Q  149 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 206  Q
    ||||||||||||| ||| ||||||||| |||||| ||||| ||||| || ||||||||    
T  652 tgagcttaactcatttggtaagaataagacataaaatatacaagatttgaggttcaaa 709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University