View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2728R-Insertion-7 (Length: 568)
Name: NF2728R-Insertion-7
Description: NF2728R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2728R-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 9 - 544
Target Start/End: Original strand, 7902183 - 7902717
Alignment:
| Q |
9 |
ctgagaagcgtaagaaaaattagtcgagcacagttttaaatagactatgctataccgtagatctaattaacaggctgaatacaatttgtacaaatacaaa |
108 |
Q |
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| T |
7902183 |
ctgagaagcgtaagaaaaattagtcgagcacagttttaaatagactatgctataccgtagatctaattaacaggctgaatacaatttgtacaaatacaaa |
7902282 |
T |
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| Q |
109 |
atatttaattatatttacaagagaataaaatctttatttgaagttcaattaatttgcttcaattttctagacacatttgcaatggaggtagaacaaggga |
208 |
Q |
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| T |
7902283 |
atatttaattatagttacaagagaataaattctttatttgaagttcaattaatttgcttcaattttctagacacatttgcaatggaggtagaacaaggga |
7902382 |
T |
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| Q |
209 |
agacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcgggtcacaacatgacagtagtggaggttgatgctgttta |
308 |
Q |
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| T |
7902383 |
agacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcgggtcacaacatgacagtagtggaggttgatgctgttta |
7902482 |
T |
|
| Q |
309 |
tacaaaaccattcaccactcaggctatactaattgctcctggtcaaaccacaaacgttctggttcatgccaatcaagttgctggtaggtactttgtggcc |
408 |
Q |
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| T |
7902483 |
tacaaaaccattcaccactcaggctatactaattgctcctggtcaaaccacaaacgttctggttcatgccaatcaagttgctggtaggtactttgtggcc |
7902582 |
T |
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| Q |
409 |
accaaggcttttatgggtgccccaattcaagttgacaacaaaactgctacagctatacttcaatacaaaagacatcccaaacactgtccaacccatcctt |
508 |
Q |
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| T |
7902583 |
accaaggcttttatggatgccccaattcaagttgacaacaaaactgctacagctatacttcaatac-aaagacatcccaaacactgtccaacccatcctt |
7902681 |
T |
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| Q |
509 |
ccacagttgccagctagcaatgacacaggttctgct |
544 |
Q |
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| T |
7902682 |
ccacagttgccagctagcaatgacacaggttttgct |
7902717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 171 - 368
Target Start/End: Original strand, 7892072 - 7892269
Alignment:
| Q |
171 |
ttttctagacacatttgcaatggaggtagaacaagggaagacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcg |
270 |
Q |
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| T |
7892072 |
ttttctagatacatatgcaatggaggttgagaagggcaagacatatctgctaagaatcatcaatgcagcccttaatgatgagcttttcttttcccttgct |
7892171 |
T |
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| Q |
271 |
ggtcacaacatgacagtagtggaggttgatgctgtttatacaaaaccattcaccactcaggctatactaattgctcctggtcaaaccacaaacgttct |
368 |
Q |
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| T |
7892172 |
ggtcacaacatgacagtagttgaagttgatgcagtttacacaaaaccattcacaacacaatccattctaattggtcctggtcaaaccacaaatgttct |
7892269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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