View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2728R-Insertion-8 (Length: 282)
Name: NF2728R-Insertion-8
Description: NF2728R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2728R-Insertion-8 |
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| [»] chr6 (9 HSPs) |
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| [»] scaffold0408 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 2357989 - 2358262
Alignment:
| Q |
9 |
ttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2357989 |
ttgagttgttaccatttggaagtggtagaaggatttgtcctgaaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatt |
2358088 |
T |
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| Q |
109 |
tgaaaccttgtattcatcgagtgagcctattgatatgacagaagtctttggattgacggtctccaaagctaccccacttgagattctggttaaaccatgt |
208 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2358089 |
tgaaatcttgtattcatcgagtgagcctattgatatgacagaagtctttggattgacggtctccaaagctaccccacttgagattctggttaaaccatgt |
2358188 |
T |
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| Q |
209 |
ttgtctgttaattgctacgaaactatgtaaacaatggaagattcaacctattggccattatcaaactatgtaaa |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2358189 |
ttgtctgttaattgctacgaaactatgtaaacaatggaagattcaacctattggccattatcaaactatgtaaa |
2358262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 2261303 - 2261199
Alignment:
| Q |
9 |
ttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatt |
108 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | ||||| ||||||| ||||||||||||||| || || || |
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| T |
2261303 |
ttgagttgttaccatttggaagtggtagaaggatatgtccaggaatatcttttggtcttcatatgattcatttaactttggctaattttttacactcctt |
2261204 |
T |
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| Q |
109 |
tgaaa |
113 |
Q |
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||||| |
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| T |
2261203 |
tgaaa |
2261199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 2363312 - 2363441
Alignment:
| Q |
17 |
ttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaacct |
116 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||| || || || ||||| ||||||||| |||||||| |||||||||||| ||||||| || |
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| T |
2363312 |
ttaccatttggaggtggtagaaggatttgtcccggaatatcattagggcttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatct |
2363411 |
T |
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| Q |
117 |
tgtattcatcgagtgagcctattgatatga |
146 |
Q |
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| T |
2363412 |
taaatccatcaagtgaacctattgatatga |
2363441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 2369058 - 2369277
Alignment:
| Q |
17 |
ttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaacct |
116 |
Q |
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|||||||||||| |||||||||||||||| || ||||| || ||||| || ||||| ||||||||| |||||||| |||||||||||| ||||||| || |
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| T |
2369058 |
ttaccatttggaggtggtagaaggatttgccctggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgcattcctttgaaatct |
2369157 |
T |
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| Q |
117 |
tgtattcatcgagtgagcctattgatatgacagaagtctttggattgacggtctccaaagctaccccacttgagattctggttaaaccatgtttgtctgt |
216 |
Q |
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| T |
2369158 |
taaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtcttc |
2369257 |
T |
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| Q |
217 |
taattgctacgaaactatgt |
236 |
Q |
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| T |
2369258 |
gaattgctatgaaattatgt |
2369277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 2340228 - 2340425
Alignment:
| Q |
17 |
ttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaacct |
116 |
Q |
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||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| ||||||| | | |||| |||||||||||| ||||| | || |
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| T |
2340228 |
ttaccatttggaagtggtagaaggaaatgtcctggaatatcgtttggacttcaaatgctgcatttcaccctagctagttttttgcattcctttgatatct |
2340327 |
T |
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| Q |
117 |
tgtattcatcgagtgagcctattgatatgacagaagtctttggattgacggtctccaaagctaccccacttgagattctggttaaaccatgtttgtct |
214 |
Q |
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| || || | ||| || ||||||||| |||| |||||||| ||| ||||||||||| |||||||||||||| |||||||| |||||||| |
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| T |
2340328 |
taaatccaacacctgatgctgttgatatgagtgaagcctttggatcaacgaattccaaagctactccacttgagattctcattaaaccacgtttgtct |
2340425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 2307550 - 2307641
Alignment:
| Q |
20 |
ccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttga |
111 |
Q |
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||||||||||||||||||||||| || || |||||||| ||||||| ||||| ||||||| ||| | |||| |||||||||||| ||||| |
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| T |
2307550 |
ccatttggaagtggtagaaggatatgccctggaatatcacttggacttcaaatgctgcatttcattctagctagttttttgcattcctttga |
2307641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 14753433 - 14753379
Alignment:
| Q |
9 |
ttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttgg |
63 |
Q |
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||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||| |
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| T |
14753433 |
ttgagtttttaccatttggaagtggaagaaggatttgtcctggaatatcctttgg |
14753379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 2351682 - 2351775
Alignment:
| Q |
18 |
taccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttga |
111 |
Q |
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|||||||||||||||||||||||| ||||| | ||||||||||||||| |||| ||||||| | | | || | |||||||||||| ||||| |
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| T |
2351682 |
taccatttggaagtggtagaaggaagtgtcctgcaatatcttttggacttcaaattgtgcatttcactctagcaagttttttgcattcctttga |
2351775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 14711354 - 14711309
Alignment:
| Q |
17 |
ttaccatttggaagtggtagaaggatttgtccaggaatatcttttg |
62 |
Q |
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||||||||||||||||| |||||||| ||||| |||||||| |||| |
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| T |
14711354 |
ttaccatttggaagtggaagaaggatgtgtcctggaatatcctttg |
14711309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 4306002 - 4306106
Alignment:
| Q |
9 |
ttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatt |
108 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| |||||||| |||||||| |||||||||||| || |
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| T |
4306002 |
ttgagttattaccatttggaagtggtagaaggatttgtccaggaatatcttatggccttcaaatggtgcatttatctttggctagttttttgcattcctt |
4306101 |
T |
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| Q |
109 |
tgaaa |
113 |
Q |
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||||| |
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| T |
4306102 |
tgaaa |
4306106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 5804254 - 5804162
Alignment:
| Q |
19 |
accatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttga |
111 |
Q |
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||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||| | | | |||| |||||||||||| ||||| |
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| T |
5804254 |
accatttggaagtggtagaaggaaatgtcctggaatatgttttggacttcaaatggtgcattttactctagctagttttttgcattcctttga |
5804162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 630 - 684
Alignment:
| Q |
9 |
ttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttgg |
63 |
Q |
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||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||| |
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| T |
630 |
ttgagtttttaccatttggaagtggaagaaggatttgtcctggaatatcctttgg |
684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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