View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2728_high_10 (Length: 387)

Name: NF2728_high_10
Description: NF2728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2728_high_10
NF2728_high_10
[»] chr3 (2 HSPs)
chr3 (18-376)||(20600960-20601326)
chr3 (138-353)||(4680757-4680972)
[»] chr4 (2 HSPs)
chr4 (120-361)||(31232047-31232288)
chr4 (16-92)||(31232324-31232400)
[»] scaffold0102 (2 HSPs)
scaffold0102 (138-353)||(4582-4797)
scaffold0102 (138-353)||(229-444)
[»] chr1 (1 HSPs)
chr1 (138-353)||(23417229-23417444)
[»] chr6 (2 HSPs)
chr6 (135-358)||(27913468-27913691)
chr6 (23-86)||(27913057-27913120)
[»] chr2 (1 HSPs)
chr2 (196-369)||(37176752-37176925)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 20600960 - 20601326
Alignment:
Q  18 tattaaacatcagcagggctttaatgtttcagttaaaattaccaaagaagttttggtcttatgctgtgctacatgttgtgtatctcttga--------cc 109  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||    
T  20600960 tattaaacatcagcagggctttgatgtttcagtcaaaattaccaaagaagttttggtcttatgctgtgctacatgttgtgtatctcttgaatagaatacc 20601059  T
Q  110 aaccaaattactacaaaataggtcatcttatgaacttttatatggacatactcctgatttgagtcatcttaaagtattttgttgtctgagttatgcctct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||      
T  20601060 aaccaaattactacaaaataggtcatcttatgaacttttatatggacatactcctgatttgagtcatcttaaagtgtttggttgtctgaattatgcctga 20601159  T
Q  210 actttgcctgttaacagacacaagtttaaccccagaacaaagaagtgtgcttttctgggttacaaatcaggaattaaaggttttattttggttgatgtca 309  Q
    |||||||||||||| |||||||||||| |||||||| |||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||     
T  20601160 actttgcctgttaatagacacaagtttgaccccagagcaaaaaagtgtgcttttctaggttacaaatcaggaatgaaaggttttattttggttgatgtcc 20601259  T
Q  310 ataattctgaaattttagtttctagaaatgtgaagttctttgatttagaatttctttttccttctct 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20601260 ataattctgaaattttagtttctagaaatgtgaagttctttgatttagaatttcttttttcttctct 20601326  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 353
Target Start/End: Complemental strand, 4680972 - 4680757
Alignment:
Q  138 tatgaacttttatatggacatactcctgatttgagtcatcttaaagtattttgttgtctgagttatgcctctactttgcctgttaacagacacaagttta 237  Q
    |||||| |||| ||||||||| | |||||| | | |||  | ||||| ||| |||||||||||||||| |||||||| |||  |||||||||||| |||     
T  4680972 tatgaagttttgtatggacatgcacctgatctcactcaattgaaagtctttggttgtctgagttatgcttctactttacctactaacagacacaaatttg 4680873  T
Q  238 accccagaacaaagaagtgtgcttttctgggttacaaatcaggaattaaaggttttattttggttgatgtcaataattctgaaattttagtttctagaaa 337  Q
    |||| ||| |||  || ||||| ||| | || |||||  ||| ||| |||||||| ||||| ||||||||  ||    |||| || ||  ||||||| ||    
T  4680872 accctagagcaagaaaatgtgcctttttagggtacaagacagaaatgaaaggtttcattttagttgatgtacattccactgagatattgatttctaggaa 4680773  T
Q  338 tgtgaagttctttgat 353  Q
    ||||||||||||||||    
T  4680772 tgtgaagttctttgat 4680757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 120 - 361
Target Start/End: Complemental strand, 31232288 - 31232047
Alignment:
Q  120 ctacaaaataggtcatcttatgaacttttatatggacatactcctgatttgagtcatcttaaagtattttgttgtctgagttatgcctctactttgcctg 219  Q
    |||||||||||||||||| ||||| ||||||||   || || || ||||||||||| ||||| || ||| ||||  | | |||||| |  ||||| |||     
T  31232288 ctacaaaataggtcatctcatgaagttttatataatcaaacaccagatttgagtcaacttaaggtgtttggttgcttcaattatgctttcactttaccta 31232189  T
Q  220 ttaacagacacaagtttaaccccagaacaaagaagtgtgcttttctgggttacaaatcaggaattaaaggttttattttggttgatgtcaataattctga 319  Q
    |||||||||| |||||| | |||||| |||||||||||| |||||| ||||||||||||||||| || || | ||||||| |||||||  | ||||||||    
T  31232188 ttaacagacataagtttgatcccagagcaaagaagtgtgtttttctaggttacaaatcaggaatgaagggctatattttgtttgatgttcaaaattctga 31232089  T
Q  320 aattttagtttctagaaatgtgaagttctttgatttagaatt 361  Q
    | | || || || | ||||||||||||||||||||| |||||    
T  31232088 agtgtttgtatccaaaaatgtgaagttctttgatttggaatt 31232047  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 31232400 - 31232324
Alignment:
Q  16 catattaaacatcagcagggctttaatgtttcagttaaaattaccaaagaagttttggtcttatgctgtgctacatg 92  Q
    |||||| ||||| || || || ||| ||||||||| ||||||||| ||||| || ||||||||||||||| ||||||    
T  31232400 catattgaacattagtagagccttactgtttcagtcaaaattacctaagaaattatggtcttatgctgtgttacatg 31232324  T

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Target: scaffold0102 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 138 - 353
Target Start/End: Original strand, 4582 - 4797
Alignment:
Q  138 tatgaacttttatatggacatactcctgatttgagtcatcttaaagtattttgttgtctgagttatgcctctactttgcctgttaacagacacaagttta 237  Q
    |||||| |||| ||||||||| | |||||| | | |||  | ||||| ||| |||||||||||||||| |||||||| |||  |||||||||||| |||     
T  4582 tatgaagttttgtatggacatgcacctgatctcactcaattgaaagtctttggttgtctgagttatgcttctactttacctactaacagacacaaatttg 4681  T
Q  238 accccagaacaaagaagtgtgcttttctgggttacaaatcaggaattaaaggttttattttggttgatgtcaataattctgaaattttagtttctagaaa 337  Q
    |||| ||| |||  || ||||| ||| | || |||||  ||||||| |||||||| ||||| ||||||||  ||    |||| || ||  ||||||| ||    
T  4682 accctagagcaagaaaatgtgcctttttagggtacaagacaggaatgaaaggtttcattttagttgatgtacattccactgagatattgatttctaggaa 4781  T
Q  338 tgtgaagttctttgat 353  Q
    ||||||||||||||||    
T  4782 tgtgaagttctttgat 4797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 353
Target Start/End: Original strand, 229 - 444
Alignment:
Q  138 tatgaacttttatatggacatactcctgatttgagtcatcttaaagtattttgttgtctgagttatgcctctactttgcctgttaacagacacaagttta 237  Q
    |||||| |||| ||||||||| | |||||| | | |||  | ||||| ||| ||||||| |||||||| |||||||| |||  |||||||||||| |||     
T  229 tatgaagttttgtatggacatgcacctgatctcactcaattgaaagtctttggttgtctaagttatgcttctactttacctactaacagacacaaatttg 328  T
Q  238 accccagaacaaagaagtgtgcttttctgggttacaaatcaggaattaaaggttttattttggttgatgtcaataattctgaaattttagtttctagaaa 337  Q
    |||| ||| |||  || ||||| ||| | || |||||  ||| ||| |||||||| ||||| ||||||||  ||    |||| || ||  ||||||| ||    
T  329 accctagagcaagaaaatgtgcctttatagggtacaagacagaaatgaaaggtttcattttagttgatgtacattccactgagatattgatttctaggaa 428  T
Q  338 tgtgaagttctttgat 353  Q
    ||||||||||||||||    
T  429 tgtgaagttctttgat 444  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 138 - 353
Target Start/End: Complemental strand, 23417444 - 23417229
Alignment:
Q  138 tatgaacttttatatggacatactcctgatttgagtcatcttaaagtattttgttgtctgagttatgcctctactttgcctgttaacagacacaagttta 237  Q
    |||||| |||| ||||||||| | |||||| | | |||  | ||||| ||| ||||||| |||||||| |||||||| |||  |||||||||||| |||     
T  23417444 tatgaagttttgtatggacatgcacctgatctcactcaattgaaagtctttggttgtctaagttatgcttctactttacctactaacagacacaaatttg 23417345  T
Q  238 accccagaacaaagaagtgtgcttttctgggttacaaatcaggaattaaaggttttattttggttgatgtcaataattctgaaattttagtttctagaaa 337  Q
    |||| ||| |||  || ||||| ||||| || |||||  ||||||| |||||||| ||||| ||||||||  ||    |||| || ||  ||||||| ||    
T  23417344 accctagagcaagaaaatgtgcctttctagggtacaagacaggaatgaaaggtttcattttagttgatgtacattccactgagatattgatttctaggaa 23417245  T
Q  338 tgtgaagttctttgat 353  Q
    ||||||||||||||||    
T  23417244 tgtgaagttctttgat 23417229  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 358
Target Start/End: Original strand, 27913468 - 27913691
Alignment:
Q  135 tcttatgaacttttatatggacatactcctgatttgagtcatcttaaagtattttgttgtctgagttatgcctctactttgcctgttaacagacacaagt 234  Q
    ||||||||| |||||||||| ||| |||||||||| |||||  ||| ||| ||| ||||  |||||||||| ||||||||||||   || || |||||||    
T  27913468 tcttatgaagttttatatgggcatgctcctgatttaagtcagtttagagtgtttggttgattgagttatgcttctactttgcctacaaataggcacaagt 27913567  T
Q  235 ttaaccccagaacaaagaagtgtgcttttctgggttacaaatcaggaattaaaggttttattttggttgatgtcaataattctgaaattttagtttctag 334  Q
    || | || ||| | |  |||||||| ||  |||| || ||  ||||||| ||||| |  ||||||||||||||  ||| |||||||||     | |||||    
T  27913568 ttgatcctagagctagaaagtgtgccttcttggggtataaggcaggaatgaaaggctacattttggttgatgttcatagttctgaaataaccatctctag 27913667  T
Q  335 aaatgtgaagttctttgatttaga 358  Q
    |||||| |||||||||||| ||||    
T  27913668 aaatgttaagttctttgatctaga 27913691  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 27913057 - 27913120
Alignment:
Q  23 aacatcagcagggctttaatgtttcagttaaaattaccaaagaagttttggtcttatgctgtgc 86  Q
    ||||| ||||| ||| |||||||||||| |||||| | ||||||||||||||||| || |||||    
T  27913057 aacattagcagagctctaatgtttcagtcaaaattgctaaagaagttttggtcttgtgatgtgc 27913120  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 369
Target Start/End: Original strand, 37176752 - 37176925
Alignment:
Q  196 tgagttatgcctctactttgcctgttaacagacacaagtttaaccccagaacaaagaagtgtgcttttctgggttacaaatcaggaattaaaggttttat 295  Q
    ||||||||||||| || || |||||||||||| |||| ||| |||| | | |||  |||||||||||  | |||| ||| ||||| ||||| || ||| |    
T  37176752 tgagttatgcctcaacattacctgttaacagatacaaatttgaccctaaagcaagaaagtgtgctttcttaggtttcaagtcaggtattaagggatttgt 37176851  T
Q  296 tttggttgatgtcaataattctgaaattttagtttctagaaatgtgaagttctttgatttagaatttctttttc 369  Q
    | | ||||||||  |||   |  | || |||||||||||||||||||| ||||||||| ||||||||| |||||    
T  37176852 tcttgttgatgtgcataccacgaagatattagtttctagaaatgtgaaattctttgatctagaatttccttttc 37176925  T

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