View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2728_high_15 (Length: 308)

Name: NF2728_high_15
Description: NF2728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2728_high_15
NF2728_high_15
[»] chr6 (9 HSPs)
chr6 (19-298)||(2357989-2358268)
chr6 (19-124)||(2261198-2261303)
chr6 (27-156)||(2363312-2363441)
chr6 (27-246)||(2369058-2369277)
chr6 (27-224)||(2340228-2340425)
chr6 (30-127)||(2307550-2307647)
chr6 (19-73)||(14753379-14753433)
chr6 (28-127)||(2351682-2351781)
chr6 (27-72)||(14711309-14711354)
[»] chr3 (1 HSPs)
chr3 (19-126)||(4306002-4306109)
[»] chr4 (1 HSPs)
chr4 (29-224)||(5804059-5804254)
[»] scaffold0408 (1 HSPs)
scaffold0408 (19-73)||(630-684)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 2357989 - 2358268
Alignment:
Q  19 ttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatt 118  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2357989 ttgagttgttaccatttggaagtggtagaaggatttgtcctgaaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatt 2358088  T
Q  119 tgaaatcttgtattcatcgagtgagcctattgatatgacagaagtctttggattgacggtctccaaagctaccccacttgagattctggttaaaccatgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2358089 tgaaatcttgtattcatcgagtgagcctattgatatgacagaagtctttggattgacggtctccaaagctaccccacttgagattctggttaaaccatgt 2358188  T
Q  219 ttgtctgttaattgctacgaaactatgtaaacaatggaagattcaacctattggccattatcaaactatgtaaacctttg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2358189 ttgtctgttaattgctacgaaactatgtaaacaatggaagattcaacctattggccattatcaaactatgtaaacctttg 2358268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 2261303 - 2261198
Alignment:
Q  19 ttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatt 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||  | ||||| ||||||| ||||||||||||||| || || ||    
T  2261303 ttgagttgttaccatttggaagtggtagaaggatatgtccaggaatatcttttggtcttcatatgattcatttaactttggctaattttttacactcctt 2261204  T
Q  119 tgaaat 124  Q
    ||||||    
T  2261203 tgaaat 2261198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 2363312 - 2363441
Alignment:
Q  27 ttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatct 126  Q
    |||||||||||| ||||||||||||||||||| |||||||| || || ||  ||||| ||||||||| |||||||| |||||||||||| ||||||||||    
T  2363312 ttaccatttggaggtggtagaaggatttgtcccggaatatcattagggcttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatct 2363411  T
Q  127 tgtattcatcgagtgagcctattgatatga 156  Q
    |  || |||| ||||| |||||||||||||    
T  2363412 taaatccatcaagtgaacctattgatatga 2363441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 27 - 246
Target Start/End: Original strand, 2369058 - 2369277
Alignment:
Q  27 ttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatct 126  Q
    |||||||||||| |||||||||||||||| || ||||| || ||||| ||  ||||| ||||||||| |||||||| |||||||||||| ||||||||||    
T  2369058 ttaccatttggaggtggtagaaggatttgccctggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgcattcctttgaaatct 2369157  T
Q  127 tgtattcatcgagtgagcctattgatatgacagaagtctttggattgacggtctccaaagctaccccacttgagattctggttaaaccatgtttgtctgt 226  Q
    |  || |||| ||||| |||||||||||||| |||   |||||||| ||   | ||||| | || || |||||||||||  |||| ||| ||||||||      
T  2369158 taaatccatcaagtgaacctattgatatgactgaaacttttggattaaccaacaccaaaacaactcctcttgagattcttattaagccacgtttgtcttc 2369257  T
Q  227 taattgctacgaaactatgt 246  Q
     |||||||| |||| |||||    
T  2369258 gaattgctatgaaattatgt 2369277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 2340228 - 2340425
Alignment:
Q  27 ttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatct 126  Q
    |||||||||||||||||||||||||  ||||| |||||||| ||||||||  ||||| ||||||| |   | |||| |||||||||||| ||||| ||||    
T  2340228 ttaccatttggaagtggtagaaggaaatgtcctggaatatcgtttggacttcaaatgctgcatttcaccctagctagttttttgcattcctttgatatct 2340327  T
Q  127 tgtattcatcgagtgagcctattgatatgacagaagtctttggattgacggtctccaaagctaccccacttgagattctggttaaaccatgtttgtct 224  Q
    |  || || |   |||  || |||||||||  |||| ||||||||  |||   ||||||||||| ||||||||||||||  |||||||| ||||||||    
T  2340328 taaatccaacacctgatgctgttgatatgagtgaagcctttggatcaacgaattccaaagctactccacttgagattctcattaaaccacgtttgtct 2340425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 2307550 - 2307647
Alignment:
Q  30 ccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatctt 127  Q
    ||||||||||||||||||||||| || || ||||||||  |||||||  ||||| ||||||| ||| | |||| |||||||||||| ||||| |||||    
T  2307550 ccatttggaagtggtagaaggatatgccctggaatatcacttggacttcaaatgctgcatttcattctagctagttttttgcattcctttgatatctt 2307647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 14753433 - 14753379
Alignment:
Q  19 ttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttgg 73  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||    
T  14753433 ttgagtttttaccatttggaagtggaagaaggatttgtcctggaatatcctttgg 14753379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 2351682 - 2351781
Alignment:
Q  28 taccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatctt 127  Q
    ||||||||||||||||||||||||  ||||| | |||||||||||||||  ||||  ||||||| | | | || | |||||||||||| ||||| |||||    
T  2351682 taccatttggaagtggtagaaggaagtgtcctgcaatatcttttggacttcaaattgtgcatttcactctagcaagttttttgcattcctttgatatctt 2351781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 14711354 - 14711309
Alignment:
Q  27 ttaccatttggaagtggtagaaggatttgtccaggaatatcttttg 72  Q
    ||||||||||||||||| |||||||| ||||| |||||||| ||||    
T  14711354 ttaccatttggaagtggaagaaggatgtgtcctggaatatcctttg 14711309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 4306002 - 4306109
Alignment:
Q  19 ttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatt 118  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||  ||||| ||||||||  |||||||| |||||||||||| ||    
T  4306002 ttgagttattaccatttggaagtggtagaaggatttgtccaggaatatcttatggccttcaaatggtgcatttatctttggctagttttttgcattcctt 4306101  T
Q  119 tgaaatct 126  Q
    ||||||||    
T  4306102 tgaaatct 4306109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 224
Target Start/End: Complemental strand, 5804254 - 5804059
Alignment:
Q  29 accatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatcttg 128  Q
    |||||||||||||||||||||||  ||||| ||||||| |||||||||  ||||| ||||||| | | | |||| |||||||||||| ||||| |||||     
T  5804254 accatttggaagtggtagaaggaaatgtcctggaatatgttttggacttcaaatggtgcattttactctagctagttttttgcattcctttgatatctta 5804155  T
Q  129 tattcatcgagtgagcctattgatatgacagaagtctttggattgacggtctccaaagctaccccacttgagattctggttaaaccatgtttgtct 224  Q
     || || |   ||| | |||||||||||| ||||  |||||||| ||      ||||||||| |||||||| |||||  |||||||| ||||||||    
T  5804154 aatccaacacctgaacttattgatatgactgaagaatttggattaacaaatagcaaagctactccacttgaaattctcattaaaccacgtttgtct 5804059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 630 - 684
Alignment:
Q  19 ttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttgg 73  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||    
T  630 ttgagtttttaccatttggaagtggaagaaggatttgtcctggaatatcctttgg 684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University