View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2728_high_21 (Length: 258)
Name: NF2728_high_21
Description: NF2728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2728_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 2 - 248
Target Start/End: Original strand, 33647648 - 33647894
Alignment:
| Q |
2 |
atactagaaggggtagatgatgttgatgacgaggacgacgatttccttaaggaaataggtttccaaatggtggagaagcaacaagacgtaggtacacctc |
101 |
Q |
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| T |
33647648 |
atactagaaggggtagatgatgttgatgacgaggacgacaatttccttaaggaaataggtttccaaatggtggagaagcaacaagacgtaggtacacctc |
33647747 |
T |
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| Q |
102 |
gcaccgagaagaaagatcatcccattgatccatccctacctgacataaaaaatggaatatatagtacagatgaatttaggatgtttacattcaaagtgaa |
201 |
Q |
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| T |
33647748 |
acaccgagaagaaagattatcccattgatccatccctacctgacataaagaatggaatatatagtacagatgaatttaggatgtttacattcaaagtgaa |
33647847 |
T |
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| Q |
202 |
gccttgttcaagggcttattctcatgattggactgagtgcccctttg |
248 |
Q |
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| T |
33647848 |
gccttgttcaagggcttattctcatgattggactgagtgcccctttg |
33647894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 41 - 248
Target Start/End: Original strand, 25812490 - 25812696
Alignment:
| Q |
41 |
gatttccttaaggaaataggtttccaaatggtggagaagcaacaagacgtaggtacacctcgcaccgagaagaaagatcatcccattgatccatccctac |
140 |
Q |
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| T |
25812490 |
gatttccttaaagaagtaggttttcaattggtggagcagcagcaaaatgtagctacacctcgaactgagaagaaagattatccaattaatccatccctac |
25812589 |
T |
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| Q |
141 |
ctgacataaaaaatggaatatatagtacagatgaatttaggatgtttacattcaaagtgaagccttgttcaagggcttattctcatgattggactgagtg |
240 |
Q |
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| T |
25812590 |
ctgacataaacaatgagatatatagtacagatgaatttaggatgtttacattcaaagtgaagccttgttcaaggg-ttattctcatgattggactgagtg |
25812688 |
T |
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| Q |
241 |
cccctttg |
248 |
Q |
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| T |
25812689 |
cccctttg |
25812696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 45 - 248
Target Start/End: Original strand, 25818160 - 25818362
Alignment:
| Q |
45 |
tccttaaggaaataggtttccaaatggtggagaagcaacaagacgtaggtacacctcgcaccgagaagaaagatcatcccattgatccatccctacctga |
144 |
Q |
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| T |
25818160 |
tccttaaggaagcaggtttccaaatg-tggagcagcaacaagatgtatgtacacctcgaactgagaagaaagattatccaattgatccatccatacctgg |
25818258 |
T |
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| Q |
145 |
cataaaaaatggaatatatagtacagatgaatttaggatgtttacattcaaagtgaagccttgttcaagggcttattctcatgattggactgagtgcccc |
244 |
Q |
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| T |
25818259 |
cataaaaaatgagatatatagcacagatgaatttaggatgtttgcattcaaagggaagccttgtttaagggcttatcctcatgattggaccaagtgccac |
25818358 |
T |
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| Q |
245 |
tttg |
248 |
Q |
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|||| |
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| T |
25818359 |
tttg |
25818362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 25821582 - 25821676
Alignment:
| Q |
109 |
gaagaaagatcatcccattgatccatccctacctgacataaaaaatggaatatatagtacagatgaatttaggatgtttacattcaaagtgaagc |
203 |
Q |
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| T |
25821582 |
gaagaaagattatcggatcgatcgatccctacctgacataaagaatgaggtatatattacagatgaatttaggatgtataaattcaaagtgaagc |
25821676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 31810635 - 31810708
Alignment:
| Q |
167 |
acagatgaatttaggatgtttacattcaaagtgaagccttgttcaagggcttattctcatgattggactgagtg |
240 |
Q |
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| T |
31810635 |
acagatgaatttagaatgtatagtttcaaagtaaagacttgttcaaggggttacactcatgattggactgagtg |
31810708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 30122217 - 30122314
Alignment:
| Q |
143 |
gacataaaaaatggaatatatagtacagatgaatttaggatgtttacattcaaagtgaagccttgttcaagggcttattctcatgattggactgagtg |
240 |
Q |
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||||| || ||||| ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30122217 |
gacattaagaatgggatatatagtaccgatgagtttaggatgtatacattcaaagtgaagccttgttcaagggcttattctcatgattggaccgagtg |
30122314 |
T |
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