View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2728_high_7 (Length: 432)
Name: NF2728_high_7
Description: NF2728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2728_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 179 - 417
Target Start/End: Complemental strand, 7989509 - 7989271
Alignment:
| Q |
179 |
aggaccaccagcacatatggtactttacctaagttttctccttttttaaataaaaagtcacatttcacaccgctttaatactaatatagatgttgaattt |
278 |
Q |
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| T |
7989509 |
aggaccaccagcacatatggtactttacctaagttttctccttttttaaataaaaagtcacatttcacaccgctttaatactaatatagatattgaattt |
7989410 |
T |
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| Q |
279 |
gttcatttttacacatatttttgtgcaaaacaagtgtgataaatacaaatattacacttacaaaacagatacaataagttatttttataccagatgaaaa |
378 |
Q |
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| T |
7989409 |
gttcatttttacacatatttttgtgcaaaacaagtgtgataaatacaaatattacacttacaaaacagatacaataagttatttttataccagatgaaaa |
7989310 |
T |
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| Q |
379 |
acaggcatcatatgtcaaacttacaacacttgctgatat |
417 |
Q |
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| T |
7989309 |
acaggcatcatatgtcaaacttacaacacttgctgatat |
7989271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 8003137 - 8002962
Alignment:
| Q |
8 |
tgaaatgaaggatatagccaatttatccaagaagaaccatgtgaaagaggtaagaagaaagtgagactgactttgctgcgtaaaaacaattgagacagat |
107 |
Q |
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| T |
8003137 |
tgaaaagaaggatatagccaatttatccaagaagaaccatgtgaaagaggtaagaagaaattgagactgactctgctgcgtaaaaacaattgagacagat |
8003038 |
T |
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| Q |
108 |
caatgaagaagataaactatttctttaatttttaattaaaaaagacatgtgtcttgttattactggggaacaggac |
183 |
Q |
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| T |
8003037 |
caatgaagaagataaactatttctttaatttttaattaaaaaagacatgtgtcttgttattattggggaacaggac |
8002962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 30518109 - 30518185
Alignment:
| Q |
146 |
aaaaagacatgtgtcttgttattactggggaacaggaccaccagcacatatggtactttacctaagttttctccttt |
222 |
Q |
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| T |
30518109 |
aaaaggacacgtgtattgttattattggggaacagtaccaccagcacataaggtaatttacctaagttttctccttt |
30518185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 51032951 - 51033023
Alignment:
| Q |
152 |
acatgtgtcttgttattactggggaacaggaccaccagcacatatggtactttacctaagttttctccttttt |
224 |
Q |
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| T |
51032951 |
acatgtgtcatgattttattggggaacagtaccaacagcacttgtggtactgtacctaagttttgtccttttt |
51033023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 30517655 - 30517608
Alignment:
| Q |
173 |
gggaacaggaccaccagcacatatggtactttacctaagttttctcct |
220 |
Q |
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| T |
30517655 |
gggaacagtaccaccagcacacaaggtactgtacctaagttttctcct |
30517608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 8003603 - 8003639
Alignment:
| Q |
182 |
accaccagcacatatggtactttacctaagttttctc |
218 |
Q |
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| T |
8003603 |
accaccagcacataaggtactgtacctaagttttctc |
8003639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 56236289 - 56236326
Alignment:
| Q |
188 |
agcacatatggtactttacctaagttttctcctttttt |
225 |
Q |
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| T |
56236289 |
agcacataaggtactttacctaagttttctcctatttt |
56236326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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