View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2728_low_10 (Length: 396)
Name: NF2728_low_10
Description: NF2728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2728_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 24 - 379
Target Start/End: Original strand, 43408095 - 43408450
Alignment:
| Q |
24 |
aatggaatgcactgctccagcagcaaatcatgatgatcagcaggaaagtggttttgttgttgggaagagatggtggattgggcctagggcaaatccaggt |
123 |
Q |
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| T |
43408095 |
aatggaatgcactgctccagcagcaaatcatgatgatcagcaggaaagtggttttgttgttgggaagagatggtggattgggcctagggcaaatccaggt |
43408194 |
T |
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| Q |
124 |
ccaacaacatctgtcaaagaaagattagtggttgctgttggttacttaaaagagtacacaaagaactcatccaacaacgtccttattcagatatgggtac |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408195 |
ccaacaacatctgtcaaagaaagattagtggttgctgttggttacttaaaagagtacacaaagaactcatccaacaacgtccttattcagatatgggtac |
43408294 |
T |
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| Q |
224 |
ctatgaggaggagatcagccctaattcacactcaaaaccactaccttcagcaggagtcatcatctgcacctgtttctgtgaatccaaacatgaacgttca |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408295 |
ctatgaggaggagatcagccctaattcacactcaaaaccactaccttcagcaggagtcatcatctgcacctgtttctgtgaatccaaacatgaacgttca |
43408394 |
T |
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| Q |
324 |
tgttcgtttctttagaagccatgactatccgcgtcatcagcagcaacagcaatatg |
379 |
Q |
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| T |
43408395 |
tgttcgtttctttagaagccatgactatccgcgtcatcagcagcaacagcaatatg |
43408450 |
T |
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