View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2728_low_13 (Length: 370)

Name: NF2728_low_13
Description: NF2728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2728_low_13
NF2728_low_13
[»] chr3 (3 HSPs)
chr3 (72-263)||(34875038-34875229)
chr3 (154-221)||(43412434-43412499)
chr3 (165-220)||(21602977-21603032)
[»] chr1 (2 HSPs)
chr1 (154-263)||(20807413-20807519)
chr1 (154-221)||(7673096-7673163)
[»] chr7 (2 HSPs)
chr7 (285-338)||(37043633-37043686)
chr7 (159-195)||(39715551-39715587)
[»] chr4 (3 HSPs)
chr4 (165-221)||(42091114-42091170)
chr4 (165-221)||(50225859-50225915)
chr4 (159-220)||(15057650-15057711)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 72 - 263
Target Start/End: Original strand, 34875038 - 34875229
Alignment:
Q  72 gttaactaacgaggaatgtaaggatacaaatgttacacctattgtagttttnnnnnnngtgttcaatgttcattaattaaagttattattactcatgtga 171  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||       ||||||||||||| |||||||| ||||||||||||||||| |    
T  34875038 gttaactaacgaggaatgtaaggatacaaatgtttcacctattgtagttttaaaaaaagtgttcaatgttcgttaattaatgttattattactcatgtaa 34875137  T
Q  172 tgttgtaatgaagtttcaattatatcatatttcacgtgcttttaatttatcattatgctcatgtattgtgttcattattgacccgtgcgaag 263  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||| |||||||    
T  34875138 tgttgtaatgaaatttcaattatatcatatttcacgtgcttttaatatattattatgctcatttattgtgttcattattaacccatgcgaag 34875229  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 43412499 - 43412434
Alignment:
Q  154 ttattattactcatgtgatgttgtaatgaagtttcaattatatcatatttcacgtgcttttaatttat 221  Q
    |||||||||||||||  | ||||||||||||||||||||| ||  ||||| || ||||||||||||||    
T  43412499 ttattattactcatg--acgttgtaatgaagtttcaattagattgtatttaacatgcttttaatttat 43412434  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 21602977 - 21603032
Alignment:
Q  165 catgtgatgttgtaatgaagtttcaattatatcatatttcacgtgcttttaattta 220  Q
    |||||||||||||||||||||||||| ||||| |||||| ||  | ||||||||||    
T  21602977 catgtgatgttgtaatgaagtttcaaatatattatatttaacaggtttttaattta 21603032  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 20807413 - 20807519
Alignment:
Q  154 ttattattactcatgtgatgttgtaatgaagtttcaattatatcatatttcacgtgcttttaatttatcattatgctcatgtattgtgttcattattgac 253  Q
    ||||||||||||||||||||| |||||| |||||||||  ||| |||||| | |||||||||||||   ||||||||||| ||||||| |||| |||  |    
T  20807413 ttattattactcatgtgatgtcgtaatggagtttcaatagtattatatttaatgtgcttttaattt---attatgctcatatattgtgctcatcattttc 20807509  T
Q  254 ccgtgcgaag 263  Q
    ||||||||||    
T  20807510 ccgtgcgaag 20807519  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 7673163 - 7673096
Alignment:
Q  154 ttattattactcatgtgatgttgtaatgaagtttcaattatatcatatttcacgtgcttttaatttat 221  Q
    ||||||||||  ||||||||||| ||||||||||||||||||  |||||| ||||  |||||||||||    
T  7673163 ttattattaccgatgtgatgttggaatgaagtttcaattataatatattttacgttgttttaatttat 7673096  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 37043633 - 37043686
Alignment:
Q  285 catttacatctctacagcacaaataatgaaacagaaattacaacatgccagcac 338  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  37043633 catttacatctctacagcacaaataaagaaacagaaattacaacgtgccagcac 37043686  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 39715551 - 39715587
Alignment:
Q  159 attactcatgtgatgttgtaatgaagtttcaattata 195  Q
    |||||||||||||||||| ||||||||||||||||||    
T  39715551 attactcatgtgatgttggaatgaagtttcaattata 39715587  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 42091170 - 42091114
Alignment:
Q  165 catgtgatgttgtaatgaagtttcaattatatcatatttcacgtgcttttaatttat 221  Q
    |||||||||||||||||||||||||||||||| |||||| || ||||||||||||||    
T  42091170 catgtgatgttgtaatgaagtttcaattatattatatttaacatgcttttaatttat 42091114  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 50225915 - 50225859
Alignment:
Q  165 catgtgatgttgtaatgaagtttcaattatatcatatttcacgtgcttttaatttat 221  Q
    |||||||||||| ||||||||||||||||||| |||||||||||  |||||||||||    
T  50225915 catgtgatgttggaatgaagtttcaattatattatatttcacgttgttttaatttat 50225859  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 15057650 - 15057711
Alignment:
Q  159 attactcatgtgatgttgtaatgaagtttcaattatatcatatttcacgtgcttttaattta 220  Q
    |||| |||| |||||||||||||||||||||| || || |||||| || || ||||||||||    
T  15057650 attaatcatatgatgttgtaatgaagtttcaactacattatatttaacatgattttaattta 15057711  T

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