View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2728_low_15 (Length: 350)
Name: NF2728_low_15
Description: NF2728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2728_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 146 - 332
Target Start/End: Complemental strand, 54930034 - 54929848
Alignment:
| Q |
146 |
ttttttaatatagtaattataattgaatgaatcgttgatggctctataaagttccaaatttctggaatcgatgattcttattttttgacctaaccnnnnn |
245 |
Q |
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| T |
54930034 |
ttttttaatatagtaattataattgaatgaatcgttgatggctctataaagttccaaatttctggaatcgatgattcttattttttgacctaaccaaaaa |
54929935 |
T |
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| Q |
246 |
nnnnnnngctggcccggtccaatgcaagtgtgtacgagcgagccggcacaaaacnnnnnnnncgttaaaatcactcacgccggtttt |
332 |
Q |
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| T |
54929934 |
ataaaaagctggcccggtccaatgcaagtgtgtacgagcgagccggcacaaaacaaaaaaaacgttaaaatcactcacgccggtttt |
54929848 |
T |
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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 38933113 - 38933053
Alignment:
| Q |
18 |
aattcagtcaataaaataactcatgaatattcagacctttatttagaagtttgtttgagag |
78 |
Q |
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| T |
38933113 |
aattcagtcaataaaataactcatgaatattcagacctttatttagaagtttgtttgagag |
38933053 |
T |
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