View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2728_low_19 (Length: 297)
Name: NF2728_low_19
Description: NF2728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2728_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 33647661 - 33647385
Alignment:
| Q |
1 |
accccttctagtatgccttgtagtatcctcttccttgaaccgtagagactattagaaaccgagacaaccaagtcgctgcaccggttaccgtttgcatcag |
100 |
Q |
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| T |
33647661 |
accccttctagtatcccttgtagtatcctcttccttgaaccgtagagactattagaaaccgagacaaccaagttgctgcaccggttacgatatgcatcag |
33647562 |
T |
|
| Q |
101 |
cggaactaacatctgcagatacatcaagcaaaagcttgacaacctcggcagaagcagcagaacaaccagaaacagcacaatgaagagcggtagccctatc |
200 |
Q |
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| T |
33647561 |
cggaactaacatctgcagatgcatcaagcagaagtttgacaacctcggcagaagcagcagaacaaccagaaacagcacaacgaagagcggtagccctatc |
33647462 |
T |
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| Q |
201 |
tgagccatacactcggttaacatcaacacgaccggttccgagaatataagacaacacacccttgcttccatataaag |
277 |
Q |
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| T |
33647461 |
tgagccacacactcggttaacatcaacacgaccggttccgagaatataagacaacacacccttgcttccatataaag |
33647385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 4 - 275
Target Start/End: Complemental strand, 25812476 - 25812206
Alignment:
| Q |
4 |
ccttctagtatgccttgtagtatcctcttccttgaaccgtagagactattagaaaccgagacaaccaagtcgctgcaccggttaccgtttgcatcagcgg |
103 |
Q |
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| T |
25812476 |
ccttctagtatggatcgtagtatcctcttccttgaaccgaatatactactagacaccgagacaatcaagtcgctgcactg-ttatcattcacatcaatgg |
25812378 |
T |
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| Q |
104 |
aactaacatctgcagatacatcaagcaaaagcttgacaacctcggcagaagcagcagaacaaccagaaacagcacaatgaagagcggtagccctatctga |
203 |
Q |
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| T |
25812377 |
aactaacatctgcagatgcatcaagcgaaaggttgataacttcagcagaagcagcagaacatccagaaacagcacaacgaagagcggtagccctatctga |
25812278 |
T |
|
| Q |
204 |
gccatacactcggttaacatcaacacgaccggttccgagaatataagacaacacacccttgcttccatataa |
275 |
Q |
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| T |
25812277 |
gccgcacactcggttgacatcaacacgactggttccgagaatataagacaacacacccttgcttccaaataa |
25812206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 37 - 270
Target Start/End: Complemental strand, 25818117 - 25817884
Alignment:
| Q |
37 |
gaaccgtagagactattagaaaccgagacaaccaagtcgctgcaccggttaccgtttgcatcagcggaactaacatctgcagatacatcaagcaaaagct |
136 |
Q |
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| T |
25818117 |
gaaccggagatactattagacaccgagacaatcaagtcgttacaccagttgtcattctcatcaacaacactaccatctgcagaagcatcaaccaaaagct |
25818018 |
T |
|
| Q |
137 |
tgacaacctcggcagaagcagcagaacaaccagaaacagcacaatgaagagcggtagccctatctgagccatacactcggttaacatcaacacgaccggt |
236 |
Q |
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| | || |||||||||||||||||||||||||| ||||| | |||||||||| ||| |||| ||||| ||| | |||| |||||| ||||||||||| |
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| T |
25818017 |
taataatctcggcagaagcagcagaacaaccagtaacagaaaaatgaagagctgtacccctgtctgaaccacaaggtcggctaacattgacacgaccggt |
25817918 |
T |
|
| Q |
237 |
tccgagaatataagacaacacacccttgcttcca |
270 |
Q |
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| T |
25817917 |
tccaagaatataagacaacacacccttgcttcca |
25817884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 250
Target Start/End: Complemental strand, 30122007 - 30121843
Alignment:
| Q |
86 |
taccgtttgcatcagcggaactaacatctgcagatacatcaagcaaaagcttgacaacctcggcagaagcagcagaacaaccagaaacagcacaatgaag |
185 |
Q |
| |
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||||||| |||||| | | |||| |||| || ||| |||||||||||| ||||| || || || ||||||||||||| ||| ||| ||||||||||| |
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| T |
30122007 |
taccgttggcatcaacagcactagcatccgccgatgcatcaagcaaaatcttgataatcttgggggaagcagcagaacccccaacaaccgcacaatgaag |
30121908 |
T |
|
| Q |
186 |
agcggtagccctatctgagcca-tacactcggttaacatcaacacgaccggttccgagaatataag |
250 |
Q |
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||| ||||| | ||| || ||| || || || ||||||||||| ||||| ||||| |||||||||| |
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| T |
30121907 |
agcagtagcaccatcggatccactagac-cgattaacatcaacccgacctgttccaagaatataag |
30121843 |
T |
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