View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2728_low_2 (Length: 662)
Name: NF2728_low_2
Description: NF2728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2728_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 16 - 651
Target Start/End: Original strand, 53106015 - 53106651
Alignment:
| Q |
16 |
agttttttacagaaaataccagcttcttttaaattttgatcactgtcagccc-atttgaatgggtctttatcttcactttgcgtccgagctttaaatttc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
53106015 |
agttttttacagaaaataccagcttcttttaaattttgatcactgtcagccccatttgagtgggtctttatcttcactttgcgtccgagctttaaatttc |
53106114 |
T |
|
| Q |
115 |
ttagccagactaattgatcctcttgcactcgagacttgaggtgacttctccattgcaatctttccattttgaaatccttgaaatagatccacatctatct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53106115 |
ttagccagactaattgatcctcttgcactcgagacttgaggtgacttctccattgcaatctttccattttgaaatccttgaaatagatccacatctatct |
53106214 |
T |
|
| Q |
215 |
gtgacaagtactgatccacaaagcctagtgcagctacggttggtgagtgagcatcatatgacattgcaggtagatattgatggttgttgtcatcaaagct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53106215 |
gtgacaagtactgatccacaaagcctagtgcagctacggttggtgagtgagcatcatatgacatagcaggtagatattgatggttgttgtcatcaaagct |
53106314 |
T |
|
| Q |
315 |
ctcaccttcaagcacattatgttttcgaaaattcaatcattcgtgaactttctagaaacatatactcggtaaactacttacttataaggtaagtcaaagc |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
53106315 |
ctcaccttcaagcacattatgttttcgaaaattcaatcattcatgaactttctagaaacaaatactcggtaaactacttacttataaggtaagtcaaagc |
53106414 |
T |
|
| Q |
415 |
aagaataattaaaaaggccaaaaacagcctcctaagtcctaatgttaaaatgatgataaacaaacacataccagtaatagatttcccacaagtggtgcca |
514 |
Q |
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| T |
53106415 |
aagaataattaaaaatgccaaaaacagcctcctaagtcctaatgttaaaatgatgataaacaaacacataccagtaatagatttcccacaagtggtgcca |
53106514 |
T |
|
| Q |
515 |
tttgattttgagtttgcttgttcacatggtagcttaggcaatctcttcttgaagagcaccgaagaattgtataccgttggactactttcatcctcaagaa |
614 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53106515 |
tttgattttgagtttgcttgctcacatggtagcttaggcaatctcttcttgaagagcaccgaagaattgtataccgttggactactttcatcctcaagaa |
53106614 |
T |
|
| Q |
615 |
atctttcaccaacagtcactttgcctgtattattcat |
651 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
53106615 |
atcttttaccaacagtcactttgcctgtattattcat |
53106651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 43918720 - 43919022
Alignment:
| Q |
16 |
agttttttacagaaaataccagcttcttttaaattttgatcactgtcagcccatttgaatgggtctttatcttcactttgcgtccgagctttaaatttct |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |
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| T |
43918720 |
agttttttacagaaaataccagcttcttttaaattttgatccttgtcagcccatttgaatgggtctttatcttcattttgcgtttgagctttaactttct |
43918819 |
T |
|
| Q |
116 |
tagccagactaattgatcctcttgcactcgagacttgaggtgacttctccattgcaatctttccattttgaaatccttgaaatagatccacatctatctg |
215 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43918820 |
tagccagactaatcgatcctctcgcactcgagacttgaggtgacttctccatagcaatctttccattttgaaatccttgaaatagatccacatctattga |
43918919 |
T |
|
| Q |
216 |
tgacaagtactgatccacaaagcctagtgcagctacggttggtgagtgagcatcatatgacattgcaggtagatattgatggttgttgtcatcaaagctc |
315 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
43918920 |
tgacaagtactgatccacgaaacctagtgcagctacggttggtgagtgagcatcatatgacatagcaggtggatattgatggttgttgtcatcaaagctc |
43919019 |
T |
|
| Q |
316 |
tca |
318 |
Q |
| |
|
||| |
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|
| T |
43919020 |
tca |
43919022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 476 - 651
Target Start/End: Original strand, 43919245 - 43919420
Alignment:
| Q |
476 |
aaacacataccagtaatagatttcccacaagtggtgccatttgattttgagtttgcttgttcacatggtagcttaggcaatctcttcttgaagagcaccg |
575 |
Q |
| |
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||||||||||||||| || |||||||||||| ||| |||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
43919245 |
aaacacataccagtaccagttttcccacaagttgtggcatttgattttgagttatcttgctcacacggtagcttaggcaatctcttcttgaagagcaccg |
43919344 |
T |
|
| Q |
576 |
aagaattgtataccgttggactactttcatcctcaagaaatctttcaccaacagtcactttgcctgtattattcat |
651 |
Q |
| |
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||||||||| |||| ||||||||||| | ||| |||||||||||||||||| |||| |||||||||||||||||| |
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| T |
43919345 |
aagaattgttcaccgctggactacttttagcctgaagaaatctttcaccaactgtcaatttgcctgtattattcat |
43919420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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