View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2728_low_21 (Length: 277)
Name: NF2728_low_21
Description: NF2728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2728_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 33647871 - 33648155
Alignment:
| Q |
1 |
atgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacatgtgtcccttgccccgagtttcg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33647871 |
atgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgcgatctgaggaaatgtcattacacatgtgtcccttgccccgagtttcg |
33647970 |
T |
|
| Q |
101 |
gaagagatcatgcaacaaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaaggat |
200 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33647971 |
gaagggatcatgcaacaaaggggatgcttctgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaaggat |
33648070 |
T |
|
| Q |
201 |
gaaaccagatgcacgaga--------------cgctcacaagccagtggagtttcgaccgttgtatgcttccacaggttctgctc |
271 |
Q |
| |
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||||| |||||||||||| |||||||||||||| |||| ||||||||||||||||||| || |||||||||| |
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| T |
33648071 |
gaaactagatgcacgagaagggtttgctttttcgctcacaagccagaggagcttcgaccgttgtatgcttctaccggttctgctc |
33648155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 7e-89; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 25812673 - 25812885
Alignment:
| Q |
1 |
atgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacatgtgtcccttgccccgagtttcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25812673 |
atgattggactgagtgcccctttgttcatccagggga-aacgcaaggcgccgtgattcgaggaaatatcattacacatgtgtcccttgccccgagtttcg |
25812771 |
T |
|
| Q |
101 |
gaagagatcatgcaacaaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaaggat |
200 |
Q |
| |
|
|||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| |
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| T |
25812772 |
gaagggatcatgtagaaaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatccagctcaatatataacaaggctttgcaaggat |
25812871 |
T |
|
| Q |
201 |
gaaaccagatgcac |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
25812872 |
gaaaccagatgcac |
25812885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 25818339 - 25818545
Alignment:
| Q |
1 |
atgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacatgtgtccctt-gccccgagtttc |
99 |
Q |
| |
|
|||||||||| |||||| |||||| || || ||||| || |||||||||||||||| |||||||||||||||||| |||||||||| | || ||||||| |
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|
| T |
25818339 |
atgattggaccaagtgccactttgtccaccccggggaaaacgcaaggcgccgtgatctgaggaaatatcattacacctgtgtccctttgtcctgagtttc |
25818438 |
T |
|
| Q |
100 |
ggaagagatcatgcaacaaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaagga |
199 |
Q |
| |
|
|||| | ||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||| |||||||||| ||||||||| |
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|
| T |
25818439 |
ggaaagggtcatgcagcaaaggggatgcttgtgaatatgcacatggtatttgcgagtgctggcttcatcctggtcaatatagaacaaggcattgcaagga |
25818538 |
T |
|
| Q |
200 |
tgaaacc |
206 |
Q |
| |
|
||||||| |
|
|
| T |
25818539 |
tgaaacc |
25818545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 25821701 - 25821896
Alignment:
| Q |
1 |
atgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacatgtgtcccttgccccgagtttcg |
100 |
Q |
| |
|
|||||||||| || || ||||||| |||| ||||||| | ||||||||||||||||||| ||||||| |||||| ||||||| ||| | || |||| |
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|
| T |
25821701 |
atgattggacagaatgtccctttgctcattctggggaaatcgcaaggcgccgtgatccgaagaaatattattacagctgtgtccattgtcatgaatttca |
25821800 |
T |
|
| Q |
101 |
gaagagatcatgcaacaaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaa |
196 |
Q |
| |
|
||| ||||||||| ||||||||| | ||| |||||||||||||| ||||||| | |||||| ||||||| || ||||||||||| ||||||||| |
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|
| T |
25821801 |
gaatggatcatgcagtaaaggggatacatgtcaatatgcacatggtgtttttgagtcctggctgcatcctggtcgatacagaacaacgctttgcaa |
25821896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 31810693 - 31810894
Alignment:
| Q |
1 |
atgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacatgtgtcccttgccccgagtttcg |
100 |
Q |
| |
|
|||||||||||||||| || ||||||||||| ||||||||||| ||| | | ||||| ||||| |||| ||| | ||||| || |||||||||||||| |
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|
| T |
31810693 |
atgattggactgagtgtccatttgttcatccaggggagaatgctaggaggagagatccaaggaagtatccttatagctgtgttccgtgccccgagtttcg |
31810792 |
T |
|
| Q |
101 |
gaagagatcatgcaacaaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaaggat |
200 |
Q |
| |
|
|| || ||||| | || ||| | ||||| ||| |||||||||||||||| | | |||||||||| | |||||||||||||||||||| || ||| |
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|
| T |
31810793 |
caaaggaacatgccagaagaaagattcatgtgagtattcacatggtatttttgagtctttgcttcatccttcacaatacagaacaaggctttgtaaagat |
31810892 |
T |
|
| Q |
201 |
ga |
202 |
Q |
| |
|
|| |
|
|
| T |
31810893 |
ga |
31810894 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 25816029 - 25816098
Alignment:
| Q |
117 |
aaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaa |
186 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| | | |||| |||||| || ||||||||||| |
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|
| T |
25816029 |
aaaggggatgcatgtgaatatgcacatggtgcttttgagtccgggctgcatcctagtcgatacagaacaa |
25816098 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 30122299 - 30122500
Alignment:
| Q |
1 |
atgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacatgtgtcccttgccccgagtttcg |
100 |
Q |
| |
|
|||||||||| ||||| || ||||||||||| ||||| ||||||||||| || ||||| |||||||||||||| | || |||||||| || |||||||| |
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|
| T |
30122299 |
atgattggaccgagtgtccttttgttcatccaggggaaaatgcaaggcgacgcgatccaaggaaatatcattatagctgcgtcccttgtcctgagtttcg |
30122398 |
T |
|
| Q |
101 |
gaagagatcatgcaacaaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaaggat |
200 |
Q |
| |
|
||| |||| |||| ||||| ||| ||||||| |||||||| ||||||||||| ||||||||||||||||| || || | ||| |||||||||||||| |
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|
| T |
30122399 |
gaaaggatcttgcagtaaaggagattcttgtgactatgcacacggtatttttgagtgctggcttcatcctgcgcagtataagacacggctttgcaaggat |
30122498 |
T |
|
| Q |
201 |
ga |
202 |
Q |
| |
|
|| |
|
|
| T |
30122499 |
ga |
30122500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 35643701 - 35643897
Alignment:
| Q |
3 |
gattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacatgtgtcccttgccccgagtttcgga |
102 |
Q |
| |
|
|||||||| ||||| |||||||||||||| || |||||||||||| | | || || |||||||| | ||||| ||||| || ||||| |||||||| | |
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|
| T |
35643701 |
gattggacggagtgtccctttgttcatccaggtgagaatgcaaggaggagagacccaaggaaatacccttacagctgtgttccctgcccagagtttcgca |
35643800 |
T |
|
| Q |
103 |
agagatcatgcaacaaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaagga |
199 |
Q |
| |
|
| | || ||| | ||||||||| ||||||| |||||||||||| |||| || | ||||| ||||| || |||||| ||||||||||||||||||| |
|
|
| T |
35643801 |
aagggtcttgccagaaaggggattcttgtgagtatgcacatggtgttttcgagtcatggctacatcccgcacaataccgaacaaggctttgcaagga |
35643897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 36456268 - 36456355
Alignment:
| Q |
1 |
atgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacatgtgtcccttg |
88 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| ||||||||||| || | | || ||||| || |||||||||| ||||||||||| |
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|
| T |
36456268 |
atgattggactgaatgcccttttgttcatccaggggagaatgcccggagaagggacccgagaaagtatcattacagctgtgtcccttg |
36456355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 38748230 - 38748173
Alignment:
| Q |
127 |
cttgtgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaac |
184 |
Q |
| |
|
||||||||| || ||||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
38748230 |
cttgtgaattcgctcatggcgtttttgaatgctggcttcatcctgctagatacagaac |
38748173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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