View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2728_low_24 (Length: 252)

Name: NF2728_low_24
Description: NF2728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2728_low_24
NF2728_low_24
[»] chr3 (3 HSPs)
chr3 (15-252)||(16485468-16485705)
chr3 (15-252)||(9459484-9459721)
chr3 (15-252)||(9470725-9470962)
[»] chr1 (2 HSPs)
chr1 (15-252)||(44599919-44600156)
chr1 (15-252)||(5722892-5723129)
[»] chr2 (1 HSPs)
chr2 (131-252)||(5564360-5564481)
[»] chr7 (1 HSPs)
chr7 (131-252)||(1884496-1884617)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 16485705 - 16485468
Alignment:
Q  15 catagggaaccaactcaaattcgcgaaatttctccaacgatttcacccaactagaaggcaaacagcacgaaaaattcacctcaaccccgttcttcatcgc 114  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16485705 cataaggaaccaactcaaattcgcgaaatttctccaacgatttcacccaactagaaggcaaacaacacgaaaaattcacctcaaccccgttcttcatcgc 16485606  T
Q  115 caaagcctcaacttcagaaacagcaaaatcagggttccatttcatcaactcaaccaccatagaacttctcctcccactctcattcctaattcgaaacaaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16485605 caaagcctcaacttcagaaacagcaaaatcagggttccatttcatcaactcaaccaccatagaacttctcctcccactctcattcctaattcgaaacaaa 16485506  T
Q  215 tccgaatatttcgccacaatcccaatcaactaatcatc 252  Q
    || |||||||||||||||||||||||||| ||||||||    
T  16485505 tcggaatatttcgccacaatcccaatcaaataatcatc 16485468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 9459721 - 9459484
Alignment:
Q  15 catagggaaccaactcaaattcgcgaaatttctccaacgatttcacccaactagaaggcaaacagcacgaaaaattcacctcaaccccgttcttcatcgc 114  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9459721 cataaggaaccaactcaaattcgcgaaatttctccaacgatttcacccaactagaaggcaaacaacacgaaaaattcacctcaaccccgttcttcatcgc 9459622  T
Q  115 caaagcctcaacttcagaaacagcaaaatcagggttccatttcatcaactcaaccaccatagaacttctcctcccactctcattcctaattcgaaacaaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9459621 caaagcctcaacttcagaaacagcaaaatcagggttccatttcatcaactcaaccaccatagaacttctcctcccactctcattcctaattcgaaacaaa 9459522  T
Q  215 tccgaatatttcgccacaatcccaatcaactaatcatc 252  Q
    |||| |||||| ||||||||||||||||| ||||||||    
T  9459521 tccggatattttgccacaatcccaatcaaataatcatc 9459484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 9470962 - 9470725
Alignment:
Q  15 catagggaaccaactcaaattcgcgaaatttctccaacgatttcacccaactagaaggcaaacagcacgaaaaattcacctcaaccccgttcttcatcgc 114  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  9470962 cataaggaaccaactcaaattcgcgaaatttttccaacgatttcacccaactagaaggcaaacaatacgaaaaattcacctcaaccccgttcttcatcgc 9470863  T
Q  115 caaagcctcaacttcagaaacagcaaaatcagggttccatttcatcaactcaaccaccatagaacttctcctcccactctcattcctaattcgaaacaaa 214  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9470862 caaagccgcaacttcagaaacagaaaaatcagggttccatttcatcaactcaaccaccatagaacttatcctcccactctcattcctaattcgaaacaaa 9470763  T
Q  215 tccgaatatttcgccacaatcccaatcaactaatcatc 252  Q
    |||| |||||||  ||||||||||||||| ||||||||    
T  9470762 tccggatatttcatcacaatcccaatcaaataatcatc 9470725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 44600156 - 44599919
Alignment:
Q  15 catagggaaccaactcaaattcgcgaaatttctccaacgatttcacccaactagaaggcaaacagcacgaaaaattcacctcaaccccgttcttcatcgc 114  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44600156 cataaggaaccaactcaaattcgcgaaatttctccaacgatttcacccaactagaaggcaaacaacacgaaaaattcacctcaaccccgttcttcatcgc 44600057  T
Q  115 caaagcctcaacttcagaaacagcaaaatcagggttccatttcatcaactcaaccaccatagaacttctcctcccactctcattcctaattcgaaacaaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44600056 caaagcctcaacttcagaaacagcaaaatcagggttccatttcatcaactcaaccaccatagaacttctcctcccactctcattcctaattcgaaacaaa 44599957  T
Q  215 tccgaatatttcgccacaatcccaatcaactaatcatc 252  Q
    || |||||||||||||||||||||||||| ||||||||    
T  44599956 tcggaatatttcgccacaatcccaatcaaataatcatc 44599919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 5723129 - 5722892
Alignment:
Q  15 catagggaaccaactcaaattcgcgaaatttctccaacgatttcacccaactagaaggcaaacagcacgaaaaattcacctcaaccccgttcttcatcgc 114  Q
    |||| |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5723129 cataaggaaccaactcaaattcatgaaatttctccaatgatttcacccaactagaaggcaaacaacacgaaaaattcacctcaaccccgttcttcatcgc 5723030  T
Q  115 caaagcctcaacttcagaaacagcaaaatcagggttccatttcatcaactcaaccaccatagaacttctcctcccactctcattcctaattcgaaacaaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5723029 caaagcctcaacttcagaaacagcaaaatcagggttccatttcatcaactcaaccaccatagaacttctcctcccactctcattcctaattcgaaacaaa 5722930  T
Q  215 tccgaatatttcgccacaatcccaatcaactaatcatc 252  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  5722929 tccggatatttcgccacaatcccaatcaaataatcatc 5722892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 131 - 252
Target Start/End: Original strand, 5564360 - 5564481
Alignment:
Q  131 gaaacagcaaaatcagggttccatttcatcaactcaaccaccatagaacttctcctcccactctcattcctaattcgaaacaaatccgaatatttcgcca 230  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  5564360 gaaacagcaaaatcagggttccatttcatcaactcaacgaccatagaacttctcctcccactctcattcctaattcgaaacaaatccggatattttgcca 5564459  T
Q  231 caatcccaatcaactaatcatc 252  Q
    ||||||||||||| ||||||||    
T  5564460 caatcccaatcaaataatcatc 5564481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 131 - 252
Target Start/End: Original strand, 1884496 - 1884617
Alignment:
Q  131 gaaacagcaaaatcagggttccatttcatcaactcaaccaccatagaacttctcctcccactctcattcctaattcgaaacaaatccgaatatttcgcca 230  Q
    ||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1884496 gaaacagcaaaatcagggttctatttcatcaactcaacgaccgtagaacttctcctcccactctcattcctaattcgaaacaaatccggatatttcgcca 1884595  T
Q  231 caatcccaatcaactaatcatc 252  Q
    |||||  |||||| ||||||||    
T  1884596 caatctgaatcaaataatcatc 1884617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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