View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2728_low_25 (Length: 238)
Name: NF2728_low_25
Description: NF2728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2728_low_25 |
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| [»] scaffold0195 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 13325436 - 13325327
Alignment:
| Q |
1 |
ccaaccgacctcgaaggttggttttgcaagcatccagtccgcgaacatatacatcatccataattttgaccgacaacatatcaccacgaatgtaaggcac |
100 |
Q |
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| T |
13325436 |
ccaaccgacctcgaaggttggttttgcaagcatccagtccacgaacatatacatcatccgtaattttaaccgataacatatcaccacgaatgtaaggcac |
13325337 |
T |
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| Q |
101 |
tgggagaggg |
110 |
Q |
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| T |
13325336 |
cgggagaggg |
13325327 |
T |
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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 30413158 - 30413050
Alignment:
| Q |
2 |
caaccgacctcgaaggttggttttgcaagcatccagtccgcgaacatatacatcatccataattttgaccgacaacatatcaccacgaatgtaaggcact |
101 |
Q |
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| T |
30413158 |
caaccgacctcgaaggttggttttgcaagcatctagttcacaaaaatagacatcatccgtgattttgacagataatatttcaccacgaatggaaggcacc |
30413059 |
T |
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| Q |
102 |
gggagaggg |
110 |
Q |
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| T |
30413058 |
gggagaggg |
30413050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0195 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0195
Description:
Target: scaffold0195; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 10667 - 10755
Alignment:
| Q |
18 |
ttggttttgcaagcatccagtccgcgaacatatacatcatccataattttgaccgacaacatatcaccacgaatgtaaggcactgggag |
106 |
Q |
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| T |
10667 |
ttggttttgcaaaaattcagtccacgaacatatacatcatcagtgattttaacagatagcatatcaccacgaatggacggcaccgggag |
10755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0195; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 16056 - 16144
Alignment:
| Q |
18 |
ttggttttgcaagcatccagtccgcgaacatatacatcatccataattttgaccgacaacatatcaccacgaatgtaaggcactgggag |
106 |
Q |
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| T |
16056 |
ttggttttgcaaaaattcagtccacgaacatatacatcatcagtgattttaacagatagcatatcaccacgaatggacggcaccgggag |
16144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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