View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2728_low_26 (Length: 230)
Name: NF2728_low_26
Description: NF2728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2728_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 76 - 215
Target Start/End: Original strand, 14540276 - 14540415
Alignment:
| Q |
76 |
acttcacaattaactacaatacatcttcgttttaaggctttcgttgaagcaattctgccctgcagaactcatcttccatgaatgatgaattttgatggaa |
175 |
Q |
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| T |
14540276 |
acttcacaattagctacaatacaccttcgttttaaggctttcgtcgaagcaattctgccttgcagaactcatcttccatgaatgatgaattttgatggaa |
14540375 |
T |
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| Q |
176 |
ccgatgaattccacaactatttatagactttcttgtttct |
215 |
Q |
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| T |
14540376 |
ccgatgaattccacaactatttataggctttcttatttct |
14540415 |
T |
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Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 46 - 215
Target Start/End: Original strand, 14541790 - 14541959
Alignment:
| Q |
46 |
gcggcttccaaaccaaacacacaaggaataacttcacaattaactacaatacatcttcgttttaaggctttcgttgaagcaattctgccctgcagaactc |
145 |
Q |
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||||||||| ||||||||||||||||||| || ||||||||| |||||||||| |||||||||||||| ||||| |||||||||| ||||||||||||| |
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| T |
14541790 |
gcggcttccgaaccaaacacacaaggaattacctcacaattagctacaatacaccttcgttttaaggccttcgtcgaagcaattcagccctgcagaactt |
14541889 |
T |
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| Q |
146 |
atcttccatgaatgatgaattttgatggaaccgatgaattccacaactatttatagactttcttgtttct |
215 |
Q |
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| T |
14541890 |
gccatccacgaatgatgaatttcaatggaaccgatgaattccataactatttataggctttctcgtttct |
14541959 |
T |
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