View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2728_low_4 (Length: 508)
Name: NF2728_low_4
Description: NF2728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2728_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 25 - 493
Target Start/End: Complemental strand, 19989233 - 19988764
Alignment:
| Q |
25 |
aaaattcaagcagatcaaatgtaacagaaatcttacaaattccaactgactattttgccct-agttcttagtcctccattaatttctccctcataattat |
123 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||||||||||||| |
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| T |
19989233 |
aaaattcatgcatatcaaatgtaacagaaatcttacaaattccaactgactattttacccacagttcctagtcttccattaatttctccctcataattat |
19989134 |
T |
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| Q |
124 |
caatttaagaaaaattcttattagtcctaaactaataacgatttttatggatctatcttttcatacaccattcatcacacccttcccaaacctacctcaa |
223 |
Q |
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| T |
19989133 |
caatttaagaaaaattcatatttgtcctaaactaataacgatttttatggatctatcttttcatacaccattcatcacacccttcccaaacctacctcaa |
19989034 |
T |
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| Q |
224 |
tgtcgaaacatcactttcacccgacactactcgatttcttcttttatgtcttcccaacaagacaaccacatacgcagacaaattccaccaatttcttcaa |
323 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
19989033 |
tgttgaaacatcactttcacccgacactactcgatttcttcttttatgtcttcctaacaagacaaccacatacacacacaaattccaccaatttcttcaa |
19988934 |
T |
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| Q |
324 |
tttgaacacattcattcatgggttgtccggtctcaaaaaaccttaccatagttgtcaaaaattccgaggaccaccattctaattcttcacaagtttcaaa |
423 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19988933 |
tttgaacacattcattcatgggttgtccagtctcaaaaaaccttaccatagttgttaaaaattccgaggacaaccattctaattcttcacaagtttcaaa |
19988834 |
T |
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| Q |
424 |
agctatgtctctcccaatgcctcttgtgcatcatcctccaacaagaaaaggtgatactcatcaccttgtt |
493 |
Q |
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| T |
19988833 |
agctatgtctctcccaatgcctcttgtgcatcaccctccaacaagaaaaggtgatactcatcaccttgtt |
19988764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 493
Target Start/End: Complemental strand, 35420901 - 35420829
Alignment:
| Q |
421 |
aaaagctatgtctctcccaatgcctcttgtgcatcatcctccaacaagaaaaggtgatactcatcaccttgtt |
493 |
Q |
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||||||| |||| || ||||||||||| | ||||| |||||||| | ||||||||| ||||||||||||||| |
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| T |
35420901 |
aaaagctttgtcccttacaatgcctcttatccatcaccctccaaccaaaaaaggtgacactcatcaccttgtt |
35420829 |
T |
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