View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_17 (Length: 549)
Name: NF2729_high_17
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_17 |
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| [»] scaffold1717 (1 HSPs) |
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| [»] scaffold1527 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 14 - 534
Target Start/End: Complemental strand, 37757471 - 37756951
Alignment:
| Q |
14 |
gaagagaagttctaatgggaagcttggaagtgtgagtgattattgtgttcgtcattgtgtttgtcctgttgtagttgtaaggtatccggaggagagtaat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37757471 |
gaagagaagttctaatgggaagcttggaagtgtgagtgattattgtgttcgtcattgtgtttgtcctgttgtagttgtaaggtatccggaggagagtaat |
37757372 |
T |
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| Q |
114 |
ggcggcggcgccggagttgaagggaatgatggtgaaaaagttgaacttcatcctgttattgaggaagaacatgaagatgagtatcatgatgctgatgatg |
213 |
Q |
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| T |
37757371 |
ggcggtggcgccggagttgaagggaatgatggtgaaaaagttgaacttcatcctgttattgaggaagaacatgaagatgagtatcatgatgctgatgatg |
37757272 |
T |
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| Q |
214 |
atgaacacaaaggtttaatcttgtaacttttttaactctaacttttaaacttgcaacgcaagcattataatttgttattttttcatgaaatgatgaatat |
313 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37757271 |
atgaacacaaaggtttaatcttttaacttttttaactctaacttttaaacttgcaacgcaagcattataatttgatattttttcatgaaatgatgaatat |
37757172 |
T |
|
| Q |
314 |
ttagtgtagtgaatattttctattggatggttacaatagtagagtatgttgtagttatttttaaaatatggttacaaagtaagcctacatgagaagatga |
413 |
Q |
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| T |
37757171 |
ttagtgtagtgaatattttctattggatggttacaatagtagagtatgttgtagttatttttaaaagatggttacaaagtaagcctacatgagaagatga |
37757072 |
T |
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| Q |
414 |
tgaatttctattcgatgacggtgtaaaattattttacactgtcagaacatagtgatagtcatttaactcttattagttgaaatgaaaatgaaaacagtaa |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37757071 |
tgaatttctattcgatgacggtgtaaaattattttacactgtcagtacatagtgatagtcatttaactcttactagttgaaatgaaaatgaaaacagtaa |
37756972 |
T |
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| Q |
514 |
agtaaacacgcacttaacttt |
534 |
Q |
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| T |
37756971 |
agtaaacaggcacttaacttt |
37756951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1717 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1717
Description:
Target: scaffold1717; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 460 - 397
Alignment:
| Q |
28 |
atgggaagcttggaagtgtgagtgattattgtgttcgtcattgtgtttgtcctgttgtagttgt |
91 |
Q |
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| T |
460 |
atgggaagcttgggagtgttagtgattactgtgtgcatcattgtgtttgtcctgttgttgttgt |
397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1527 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1527
Description:
Target: scaffold1527; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 706 - 643
Alignment:
| Q |
28 |
atgggaagcttggaagtgtgagtgattattgtgttcgtcattgtgtttgtcctgttgtagttgt |
91 |
Q |
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| T |
706 |
atgggaagcttgggagtgttagtgattactgtgtgcatcattgtgtttgtcctgttgttgttgt |
643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 358 - 456
Target Start/End: Complemental strand, 47552932 - 47552834
Alignment:
| Q |
358 |
tatgttgtagttatttttaaaatatggttacaaagtaagcctacatgagaagatgatgaatttctattcgatgacggtgtaaaattattttacactgtc |
456 |
Q |
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||||| ||||||||||| |||| | |||| |||||| |||||||| |||||||||| || ||||| ||||||||||||||| ||||||| |||||| |
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| T |
47552932 |
tatgtggtagttattttgaaaagacagttataaagtaggcctacatagtaagatgatgagttcctattggatgacggtgtaaaactattttatactgtc |
47552834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 47549905 - 47549953
Alignment:
| Q |
409 |
gatgatgaatttctattcgatgacggtgtaaaattattttacactgtca |
457 |
Q |
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|||| ||| ||||||||||| ||||||||||||||||||||| ||||| |
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| T |
47549905 |
gatggtgagtttctattcgaaaacggtgtaaaattattttacattgtca |
47549953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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