View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_20 (Length: 522)
Name: NF2729_high_20
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 21 - 376
Target Start/End: Original strand, 21484248 - 21484600
Alignment:
| Q |
21 |
gaagcagggtcaaaaaattcattagcttctaaaagctccatgtaaccaaaagtatccataatgttaacatcatccatgcaatcaccaccaccaacaacaa |
120 |
Q |
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| T |
21484248 |
gaagcagggtcaaaaaattcattagcttctaaaagctccatgtaaccaaaagtatccataatgttaacatcatccatgcaatcaccaccaccaacaacaa |
21484347 |
T |
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| Q |
121 |
catcattgttagaaacaccaagatcttgttgctgttgctgagaaatctccatagaagcagttgatgacaaagttgttggaggatgaccatgatgataatc |
220 |
Q |
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| T |
21484348 |
catcattgttagaaacaccaagatcttgttgctgttgttgagaaatctccatagaagcagttgatgacaaagttgttggaggatgaccatgatgataatc |
21484447 |
T |
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| Q |
221 |
taatggatgaccatgtttttgatgataaccttgatgatctacttcaacatctgatttcaaaacagcccaagaagctgcagatgaagaagaagctgaggaa |
320 |
Q |
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| T |
21484448 |
taatggatgaccatgtttt---tgataaccttgatgatctacttcaacatctgatttcaaaacagcccaagaagctgcagatgaagaagaagctgaggaa |
21484544 |
T |
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| Q |
321 |
gaagaagaggtagtagttgttgtagttgaagtacatgcaatggttttcaatggtgt |
376 |
Q |
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| T |
21484545 |
gaagaagaggtagtagttgttgtagttgaagtacatgcaatggttttcaatggtgt |
21484600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 407 - 513
Target Start/End: Original strand, 21484631 - 21484737
Alignment:
| Q |
407 |
catgcatggaaaatcaggtaaaggtggaaaatcagcatagaacatagatgcatcatcattcatattcatacctaaaagatcaccatcttgatcatttgta |
506 |
Q |
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| T |
21484631 |
catgcatggaaaatcaggtaaaggaggaaaatcagcatagaacatagatgcatcatcattcatattcatacctaaaagatcaccatcttgatcatttgta |
21484730 |
T |
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| Q |
507 |
gtattat |
513 |
Q |
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| T |
21484731 |
gtattat |
21484737 |
T |
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