View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2729_high_23 (Length: 499)
Name: NF2729_high_23
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 15 - 483
Target Start/End: Complemental strand, 31202204 - 31201733
Alignment:
| Q |
15 |
cacagaggaaccagagaaatattacgagttaatatgcaattttgtcaacaaaaccaaagcctcattaggagtgatttggaacacctttgaagacttggaa |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31202204 |
cacaaaggaaccagagaaatattacgagttaatatgcaattttgtcaacaaaaccaaagcctcattaggagtgatttggaacacctttgaagacttggaa |
31202105 |
T |
|
| Q |
115 |
tcattaccactatca---ctaagccaacaattttcaattccaatgttcccaataggaccttttcacaagtatttccctactaacaatacatcttcttcta |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31202104 |
tcattaccactatcaacactaagccaacaattttcaattccaatgttcccaataggaccttttcacaagtatttccctactaacaatacatcttcttcta |
31202005 |
T |
|
| Q |
212 |
gcagcttaataccacaagaccaaaattgcatttcatggttaaacaaacacaaaccaaaatctgtggtttatgtgagttttggaagtgtagcttcaataac |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31202004 |
gcagcttaataccacaagaccaaaattgcatttcatggttaaacaaacacaaaccaaaatctgtggtttatgtgagttttggaagtgtagcttcaataac |
31201905 |
T |
|
| Q |
312 |
cgaggcggagtttttggagatagcttggggtttagtcaacagtaattatccgtttttgtgggtggttcgaccgggactaatcgatggccacgagtggctc |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
31201904 |
cgaggcggagtttttggagatagcttggggtttagtcaacagtaattatccgtttttgtgggtggttagaccgggactaatcggtggccacgagtggctt |
31201805 |
T |
|
| Q |
412 |
aggcctttgccaaatgagttcatggagaatttagaaggtagaggctatatagtgaaatgggcaccacaacaa |
483 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201804 |
gggccgttgccaaatgggttcatggagaatttagaaggtagaggctatatagtgaaatgggcaccacaacaa |
31201733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 31209823 - 31209871
Alignment:
| Q |
305 |
caataaccgaggcggagtttttggagatagcttggggtttagtcaacag |
353 |
Q |
| |
|
|||||| |||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
31209823 |
caataagcgaggccgagttcttggagatagcttgggggttagtcaacag |
31209871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University