View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_25 (Length: 476)
Name: NF2729_high_25
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_25 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 36257701 - 36257229
Alignment:
| Q |
1 |
tttaattgctccttatactttcatgtcatttagtctagtttgggctaaccaaatcatacaccaatttcacgtagctttacaagcttaaagnnnnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36257701 |
tttaattgctccttatactttcatgtcatttagtctagtttgggctaaccaaatcatacaccaatttcacgtagctttacaagcttaaagtttttttttt |
36257602 |
T |
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| Q |
101 |
nnnnnnnaaagaacaagcttaaagttaattacccaattatatgaaatcagaactagggagcaacaatttttagtcgcatacttagatgatctgcaacgaa |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36257601 |
ttt----aaagaacatgcttaaagttaattacccaattatatgaaatcagaactagggagcaacaatttttagtcgcatacttagatgatctgctacgaa |
36257506 |
T |
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| Q |
201 |
aagcactcaaaatggtgatcaattaagcaaatttttcnnnnnnnt-aagcaagtgtgtataggaaaaatgtgatgatagtacgttgcaaggacctcatta |
299 |
Q |
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|||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36257505 |
aagcactcaaaatggtgatcgattaagcaaatttttcaaaaaaattaagcaagtgtgtataggaaaaatgtgatgatagtacgttgcaaggacctcatta |
36257406 |
T |
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| Q |
300 |
tcttaaagaagatatggtgattattaattcacgtgaggtagctggagaaaaagggattatttgtgagtaaaataaaaggatgtagtgatttggagtcttt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36257405 |
tcttaaagaagatatggtgattattaattcacgtgaggtagctggagaaaaagggattatttgtgagtaaaataaaaggatgtagtgatttggagtcttt |
36257306 |
T |
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| Q |
400 |
tgaggcaggcttgaccaaagcaaaaagtaataataatagaaagnnnnnnnttgggaggttgtgtttggttattgaat |
476 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36257305 |
tgaggcaggcttgaccaaagcaaaaagtaataataatagaaagaaaaaaattgggaggttgtgtttggttattgaat |
36257229 |
T |
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