View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_29 (Length: 446)
Name: NF2729_high_29
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 207 - 431
Target Start/End: Original strand, 743326 - 743551
Alignment:
| Q |
207 |
ccatacttacatctgcaagacgaactttgctagcgttgtcgtcttttttccc----caaagaaagaagttcaacttccagtttcactctcttccttaaaa |
302 |
Q |
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| T |
743326 |
ccatacttacatctgcaagacgaactttgctagcgttgtcgtcttttttcccggcccaaagaaagaagttcaacttccagtttcactctcttccttaaaa |
743425 |
T |
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| Q |
303 |
taaattcaatatcctttggctgactatcaaattgaactcttaacaacagtaggattcatcttttagctccaacattatattacaataaaaatatcaacat |
402 |
Q |
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| T |
743426 |
taaattcaatatcctttg--tgactatcaaattgaactct-aacaacagtaggattcatcttttagctccaacattatattacaataaaaatatcaacat |
743522 |
T |
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| Q |
403 |
gacgagataatcatatatataatatttgt |
431 |
Q |
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| T |
743523 |
gacgagataatcatatatataatatttgt |
743551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 209 - 367
Target Start/End: Original strand, 42450594 - 42450751
Alignment:
| Q |
209 |
atacttacatctgcaagacgaactttgctagcgttgtcgtcttttttccccaaagaaagaagttcaacttccagtttcactctcttccttaaaataaatt |
308 |
Q |
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| T |
42450594 |
atacttacatctgcaagacgagctttgctagcgttgtcatcttttctcgccaaagaaagaagttccacttccagtttcactctcttcctcaaaataagtt |
42450693 |
T |
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| Q |
309 |
caatatcctttggctgactatcaaattgaactcttaacaacagtaggattcatctttta |
367 |
Q |
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| T |
42450694 |
caatatcctttggctgaccatcaaattgaactc-taacaccagcagggttcatctttta |
42450751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 743111 - 743223
Alignment:
| Q |
1 |
tcgcgtttcagcttcagcctttgaatctcatcaatccttgctttctcttttctatatacttca-tgaccagagttagaagcttctcttttaagtcgtcaa |
99 |
Q |
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| T |
743111 |
tcgcttttcagcttcagcctttgaatctcatcaatccttgctttctcttttc--tatacttcattgaccagagttagaagcttctcttttaagtcgtcaa |
743208 |
T |
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| Q |
100 |
gttctatccacccct |
114 |
Q |
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| T |
743209 |
gttctttccgcccct |
743223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 42450362 - 42450460
Alignment:
| Q |
4 |
cgtttcagcttcagcctttgaatctcatcaatccttgctttctcttttctatatacttcatgaccagagttagaagcttctcttttaagtcgtcaagttc |
103 |
Q |
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| T |
42450362 |
cgtttctgcttcagcctttgaatctcatcaatcctcactttctcttttctata--cttcatgaccagagttagaagcatttcttttaagtcgtcaagttc |
42450459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 45467513 - 45467415
Alignment:
| Q |
4 |
cgtttcagcttcagcctttgaatctcatcaatccttgctttctcttttctatatacttcatgaccagagttagaagcttctcttttaagtcgtcaagttc |
103 |
Q |
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| T |
45467513 |
cgtttctgcttcagccttcgaatctcatcaatcctctctttctctttac--tatacttcatcttcagaggttgaagcttgtctctcaagtcatcaagttc |
45467416 |
T |
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