View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_33 (Length: 426)
Name: NF2729_high_33
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 34140176 - 34139769
Alignment:
| Q |
1 |
tatattcaccttcaaagtttccttcttcatcgacaaactcaccaatctcggccatagtatacattataccagtcatagcaattacatcaacataaaacaa |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34140176 |
tatattcaccttcaaagcttccttcttcatcgacaaactcaccaatctcggccatagtatacattataccagtcatagcaattacatcgacataaaacaa |
34140077 |
T |
|
| Q |
101 |
agtagccaatgcctcccaaacttcccttttattaaaatcaccaaagctaaaaacccatgcagttgattcaatcttatgaaaatcaacaatttgcttgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34140076 |
agtagccaatgcctcccaaacttcccttttattaaaatcaccaaagctaaaaacccatgcagttgattcaatcttatgaaaatcaacaatttgcttgaaa |
34139977 |
T |
|
| Q |
201 |
taactaaaattcccatcaccaagtggtgtatcaggaaaataagtaacttcagtgtgtctaaaccaagacacaaatgtcacaaaaagaataccataaatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34139976 |
taactaaaattcccatcaccaagtggtgtatcaggaaaataagtaacttcagtgtgtctaaaccaagacacaaatgtcacaaaaagaataccataaatca |
34139877 |
T |
|
| Q |
301 |
tactacctttaatattcttcattaaaccatagcttgtgataagaaaaccaaaagctccaagccagaactttgggctttgcaacttaccacccaaacaagc |
400 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34139876 |
tactacctttaatattcttcattaaaccataacttgtgataagaaaaccaaaagctccaagccagaactttgggctttgcaacttaccacccaaacaagc |
34139777 |
T |
|
| Q |
401 |
cccagttt |
408 |
Q |
| |
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|||||||| |
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| T |
34139776 |
cccagttt |
34139769 |
T |
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