View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_37 (Length: 412)
Name: NF2729_high_37
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 58 - 394
Target Start/End: Original strand, 44576887 - 44577221
Alignment:
| Q |
58 |
ttgtcccgtccgtgcagacacaatatgccaaatactccctcacaacatcttaaatagtattaagaagagtaaactacttgcatcatccttctaaattatt |
157 |
Q |
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| T |
44576887 |
ttgtcccgtccgtgcagacacaatatgccaaatactccctcacaacatctcaaatagtattaagaagagtaaactacttgcatcatccttctaaattatt |
44576986 |
T |
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| Q |
158 |
attcataattattatagtttatatattgacatgctttttagctgaataattgagacatatcatatcatccatttgtgagagtctgacggaattggaacgc |
257 |
Q |
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| T |
44576987 |
attgataattattatagtttatatattgacatactttttagctgaataattgagacatatcatatcatccatttgggagagtgtgacggaattggaacgc |
44577086 |
T |
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| Q |
258 |
tcaatgccaaattgaataagtgagacatatcacccctttttgtgagagtgtcacgaaattggaacatccaatattcgatccttaccttagccatatacct |
357 |
Q |
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| T |
44577087 |
tcaatgcccaattgaataagtgagacgtatcacccc--tttgtgaaagtgtgacgaaattggaacatccaatatcttatccttaccttagctatatactc |
44577184 |
T |
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| Q |
358 |
cttttggatagatacattaattattcaatgtatttaa |
394 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
44577185 |
cttttggatagatacattaattattcaatgtatttaa |
44577221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 44576806 - 44576863
Alignment:
| Q |
1 |
attcacacacacgcgggatgagatggtttggttttcgatttttgagagacaacaatat |
58 |
Q |
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| T |
44576806 |
attcacacacacgcgggatgagatggtttggttttcgatttttgagagacaacaatat |
44576863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 394
Target Start/End: Complemental strand, 33123073 - 33123045
Alignment:
| Q |
366 |
tagatacattaattattcaatgtatttaa |
394 |
Q |
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| T |
33123073 |
tagatacattaattattcaatgtatttaa |
33123045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 394
Target Start/End: Complemental strand, 26468356 - 26468328
Alignment:
| Q |
366 |
tagatacattaattattcaatgtatttaa |
394 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
26468356 |
tagatacattaattattcaatgtatttaa |
26468328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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