View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_39 (Length: 410)
Name: NF2729_high_39
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 375
Target Start/End: Original strand, 2517026 - 2517376
Alignment:
| Q |
20 |
gcatccgcgttcaaaactccttgaatataatagctagattcacccttgtcggaatgcggtcaagtaacaatgtccaagcaaatgctagccctttagacgg |
119 |
Q |
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| T |
2517026 |
gcatccgcgttcaaaactccttgaata-----gctagattcaccctcgtcggaatgcggtcaagtaacaatgtccaagcgaatgctagccctttaaacgg |
2517120 |
T |
|
| Q |
120 |
agccccactcttccgaaggccaccaaacacaagctcctcgtctttggataaattaccatccaacaaaaacaacctctcaagtttcttgtaactagaattc |
219 |
Q |
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| T |
2517121 |
agccccactcttccgaaggccaccaaacacaagctcctcgtcttcggataaattaccatccaacaaatacaacctctcaggttgcttgtaactagaattc |
2517220 |
T |
|
| Q |
220 |
actgagaaacataccctccggctcccacccccactcgtctctcccttcacctatcactatcccctccaacaataccaccaagttacccactagctccgtt |
319 |
Q |
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||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2517221 |
actgagaaacataccctccagcctccacccccactcgtctctctcttcacctatcactatcccctccaacattaccaccaagttacccactagctccgtt |
2517320 |
T |
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| Q |
320 |
tcccacacaaagagatatctacgccacccaaaatttcacctcccattctcctctct |
375 |
Q |
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| T |
2517321 |
tcccacacaaagagatctctacgccacccgaaatttcaactcccattctcctctct |
2517376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 47 - 363
Target Start/End: Complemental strand, 21018810 - 21018491
Alignment:
| Q |
47 |
taatagctagattcacccttgtcggaatgcggtcaagtaacaatgtccaagcaaatgctagccctttagacggagccccactcttccgaaggccaccaaa |
146 |
Q |
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| T |
21018810 |
taatcgctagattcacccttatcggtatacggtcaagtaacaaagtccaagcaaaagctaacactttagacggcacccgacacctccaaagatcaccaaa |
21018711 |
T |
|
| Q |
147 |
cacaagctcctcgtctttggataaattaccatccaacaaaaacaacctctcaagtttcttgtaactagaattcactgagaaacat----accctccggct |
242 |
Q |
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|||| ||||||| |||| |||||||||| |||| | |||||||| ||||||||| ||| |||| || ||||| |||||| | |||||||| |
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| T |
21018710 |
cacacgctcctcatcttcggataaattaacatcgatcaaaaacagcctctcaagaagcttataacacgagttcaccgagaaaactctccctcctccggcc |
21018611 |
T |
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| Q |
243 |
cccacccccactcgtctctcccttcacctatcactatcccctccaacaataccaccaagttacccactagctccgtttcccacacaaagagatatctacg |
342 |
Q |
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|||||||||||| ||||||||||| || | || | ||| |||||||| || ||||||| |||| |||||||||||||||||||| || | ||| || |
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| T |
21018610 |
tccacccccactc-tctctcccttcccccaccaacaccccttccaacaaaccccccaagttctccacaagctccgtttcccacacaaataggtctcttcg |
21018512 |
T |
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| Q |
343 |
ccacccaaaatttcacctccc |
363 |
Q |
| |
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|||| | ||||| |||||||| |
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| T |
21018511 |
ccacaccaaattccacctccc |
21018491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 46 - 174
Target Start/End: Complemental strand, 16744234 - 16744105
Alignment:
| Q |
46 |
ataatagctagattcacccttg-tcggaatgcggtcaagtaacaatgtccaagcaaatgctagccctttagacggagccccactcttccgaaggccacca |
144 |
Q |
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||||||||||| |||||||||| ||||||| |||||||||||||| || |||||||| |||| | ||||||||||||| | || ||||| ||| |||||| |
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| T |
16744234 |
ataatagctaggttcacccttgatcggaattcggtcaagtaacaacgttcaagcaaaagctaacactttagacggagcgcgacacttccaaagaccacca |
16744135 |
T |
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| Q |
145 |
aacacaagctcctcgtctttggataaatta |
174 |
Q |
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|||||| |||||| ||| |||||||||| |
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| T |
16744134 |
aacacacactcctcatctccggataaatta |
16744105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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