View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2729_high_4 (Length: 867)

Name: NF2729_high_4
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2729_high_4
NF2729_high_4
[»] chr7 (2 HSPs)
chr7 (1-439)||(18215909-18216350)
chr7 (506-853)||(18216544-18216877)


Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 18215909 - 18216350
Alignment:
Q  1 atttttgtttctgtttctattttgaaactaaataaaaatttaaaaggttaatagaaatatcaagaatctaactaaacacatatgtgggagtaatattcat 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  18215909 atttttgtttctgtttttattttgaaactaaataaaaatttaaaaggttaataagaatatcaagaatctaactaaacacatatgtgggagtaatattcat 18216008  T
Q  101 agtaataggatttctaggaaagctatttccaaaaataaattttaacattctgaaacaaacctgaatatgagctttatgttgtaacagcaggacgcagcaa 200  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18216009 agtaatagaatttctaggaaagctatttccaaaaataaatattaacattctgaaacaaacctgaatatgagttttatgttgtaacagcaggacgcagcaa 18216108  T
Q  201 catattttagccgtccgatcttaaatggatgaccaagatcgtttatagttaannnnnnngctg---aatataaaccgtccgatctcaactcaacgaccga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||   |||||||||||||||||||||| |||||||||||    
T  18216109 catattttagccgtccgatcttaaatggatgaccaagatcgtttatagttaatttttttgctgtataatataaaccgtccgatctcaaatcaacgaccga 18216208  T
Q  298 gattgtctaccgtctgaattgtttacagcaagcaatcttggtccctgaaatataacctctgttgtaagtgaaaaatattattgcatcaattgtgattgtg 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18216209 gattgtctaccgtctgaattgtttacagcaagcaatcttggtccctgaaatataacctctgttgtaagtgaaaaatattattgcatcaatagtgattgtg 18216308  T
Q  398 aaaaataaatttgatatgctacgcgatcttttaactatgatc 439  Q
    |||||||||||||| ||||| |||||||||||||| ||||||    
T  18216309 aaaaataaatttgacatgctgcgcgatcttttaaccatgatc 18216350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 506 - 853
Target Start/End: Original strand, 18216544 - 18216877
Alignment:
Q  506 caataatatttgcaagtttatatgtgtgtatttgtgtttattcattttgcctttgnnnnnnnntaaataataacaataatatttgcaagttgatgtgtat 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||| |||||||||||||||||||    
T  18216544 caataatatttgcaagtttatatgtgtgtatttgtgtttattcattttgcctttgaaaaaaaataaataataacaataatttttgcaagttgatgtgtat 18216643  T
Q  606 gatgtgtgtttatatcatgttctgtccccttcccttcatcataactctcctatcaaagccacnnnnnnnnnnnnnnncagacacacaaattggtataaca 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                | |||||||||||||||||| |    
T  18216644 gatgtgtgtttatatcatgttctgtccccttcccttcatcataactctcctatcaaagccacaa--------------acacacacaaattggtataata 18216729  T
Q  706 acatagtttacattctgtcacttcttcctctgtggctttttccttccttcctaaaaacaatggctttaacttcaatttcatttctcttttttcttctatc 805  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18216730 acatagtttacattctgtcacttcttcctctgtggctttttccttccttcctaaaaacaatggctttaacttcaatttcatttctcttttttcttctatc 18216829  T
Q  806 tatgttttcagcaacagtttcatccctcacatgttcaactcaaaaact 853  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  18216830 tatgttttcagcaacagtttcatccctcacatgttcaactcagaaact 18216877  T

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